Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Forward (+)

568958 .. 569527

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1008900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGAAGCTAGGGACCAAGGCGAACCCACATTTCCAGCGAAGCGCAAACCCGATCTCAGCTGCGGCGACCAGCCCGACTGCCCCAACAAAACCCAGAAGCTTGAAGTTCCCGATGACAGTCCGTCGGCTGCGGAAGCTAAAAGTCAAACCCCAGAAAATTTCAACAACAATTCCTCCGCTGGCGAAGAGAAAACCTGTAAGTTTGAAGCCAATGCTGACCTCGAAGACGAAGACGAGGAGGAAGATTACGAAGAAGAAGAAGAAGACGATGAAAAGTCTAATGGGAAGGCGGAGGTGGATCGGAAGGGGAAGGGGATTATGAGAGATGACAAGGGCAAAGGGAAACTGGTAGAAGAAGATGACGACGACAGCGACGATGATTCGAGCGACGGCGGAAGCGAATTCGAAGACGGAGACAGCGATTTGTCGGATGATCCTCTTGCAGAGGTCGATTTGGATAACATTCTTCCTTCGAGGACTCGGAGACGGCAGGTGCAGCCTGGAGTTTACATTGCTAATGACATTGCAAATGAAGTAGAAGACGACAGTGATGACAGCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.83

Weight (kDa)

4.05

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	5 cut(s)	66, 134, 180, 293, 396
AclWI	GGATC	2 cut(s)	309, 431
AcsI	RAATTY	2 cut(s)	160, 404
AcuI	CTGAAG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	107, 166, 209
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	11, 63, 103, 140
AluI	AGCT	4 cut(s)	11, 63, 103, 140
Alw26I	GTCTC	2 cut(s)	411, 481
AlwI	GGATC	2 cut(s)	309, 431
ApeKI	GCWGC	3 cut(s)	63, 131, 499
ApoI	RAATTY	2 cut(s)	160, 404
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	16
BbsI	GAAGAC	5 cut(s)	234, 240, 273, 417, 549
BbvI	GCAGC	3 cut(s)	50, 118, 511
BceAI	ACGGC	2 cut(s)	409, 506
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	411, 481
BfaI	CTAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	4 cut(s)	64, 67, 132, 500
BlsI	GCNGC	4 cut(s)	65, 68, 133, 501
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	16
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	504
BpiI	GAAGAC	5 cut(s)	234, 240, 273, 417, 549
BpmI	CTGGAG	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	513, 525
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	2 cut(s)	513, 525
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	50, 118, 511
BsgI	GTGCAG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	411, 481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	55, 301, 436
BspACI	CCGC	5 cut(s)	66, 134, 180, 293, 396
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	309, 431
BspT104I	TTCGAA	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	513, 525
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	55, 301, 436
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	122, 551
Bst6I	CTCTTC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	3 cut(s)	58, 304, 439
BstMAI	GTCTC	2 cut(s)	411, 481
BstMBI	GATC	3 cut(s)	55, 301, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 499
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	50, 118, 511
BstV2I	GAAGAC	5 cut(s)	234, 240, 273, 417, 549
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	556
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	16
CviJI	RGCY	9 cut(s)	5, 11, 63, 76, 103, 131, 140, 212, 502
CviKI_1	RGCY	9 cut(s)	5, 11, 63, 76, 103, 131, 140, 212, 502
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	3 cut(s)	57, 303, 438
DpnII	GATC	3 cut(s)	55, 301, 436
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	2 cut(s)	308, 411
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	481
FaiI	YATR	1 cut(s)	323
FaqI	GGGAC	1 cut(s)	29
Fnu4HI	GCNGC	4 cut(s)	64, 67, 132, 500
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	64, 67, 132, 500
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	64, 67, 132, 500
GsuI	CTGGAG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	383, 481
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	306, 433, 486
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	4 cut(s)	130, 371, 380, 395
HpyAV	CCTTC	4 cut(s)	283, 301, 307, 483
HpyCH4III	ACNGT	2 cut(s)	122, 551
HpyCH4V	TGCA	3 cut(s)	446, 499, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 499
HpyF3I	CTNAG	1 cut(s)	59
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	55, 301, 436
Lsp1109I	GCAGC	3 cut(s)	50, 118, 511
MaeI	CTAG	1 cut(s)	12
MalI	GATC	3 cut(s)	57, 303, 438
MboI	GATC	3 cut(s)	55, 301, 436
MluCI	AATT	3 cut(s)	160, 172, 404
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	8 cut(s)	187, 232, 233, 235, 289, 442, 450, 471
MspA1I	CMGCKG	2 cut(s)	63, 182
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	137, 499
NdeII	GATC	3 cut(s)	55, 301, 436
NlaIV	GGNNCC	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	408
PaqCI	CACCTGC	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	4 cut(s)	372, 375, 399, 420
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	65, 68, 133, 501
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	63
SatI	GCNGC	4 cut(s)	64, 67, 132, 500
Sau3AI	GATC	3 cut(s)	55, 301, 436
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	9 cut(s)	13, 65, 105, 142, 200, 225, 300, 453, 498
SfuI	TTCGAA	1 cut(s)	408
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	3 cut(s)	160, 172, 404
SsiI	CCGC	5 cut(s)	66, 134, 180, 293, 396
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	122, 551
TaqI	TCGA	5 cut(s)	225, 386, 408, 453, 476
TasI	AATT	3 cut(s)	160, 172, 404
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	3 cut(s)	63, 131, 499
TspDTI	ATGAA	2 cut(s)	288, 549
TspGWI	ACGGA	2 cut(s)	114, 429
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	160, 404
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.