FvH4_7g04131

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003955
Physical Location & Seq
Forward (+)
4761876 .. 4767555
5680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04131.t5

Sequence Viewer

Length: 546 bp
ATGAAACCCTCTTCTTCTTCTTCTTCTTCGTCGTGCGGATTAAGCACGCCGCTTACCATTCTGTTCCAGTCGTCGAGACCCAAAGCCTGCGACAACCGCAACAGCAACGATTCTCTTCTCAGAGACTTGGCCGCTCGAGAGTTCAACGCCTTCCTCTGGATCGCTCTCATCGCCGTCACCGCTCTTCTGCTCCGCGAACTCGTCCAGGTGCACCGCTCATGGGCCTTAGCCAAGCCCATCCCTGGCCCTCCTTGCCCCTCTTTCTACGGCCACTTCCGCCTTCTTTCCCGCCAAAACCTCACCGAGGTGTTGGCTGATTTTCACAAGAAGTATGGCTCCGTTGTGAAGCTGTGGCTGGGACCGACTCAGCTTTTGGTATCGATAAAGGATCAGACTCTTGTCAAAGAGATGCTGCTCAAGGCTGCGGATATGTTGCCTATGACTGGGAGGGCTTTCCAGTTGGCCTTTGGAAGGTCAACTCTGTTTGCTTCTTCTTTCCACCAGTCTGCAGAGTTCGGGTTGGATCTAGTAGGAGACGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

182

Amino Acids

19.94

Weight (kDa)

9.33

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 81 - 142 6.6e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 134, 182, 216
AccII CGCG 1 cut(s) 195
AclWI GGATC 3 cut(s) 167, 396, 531
AcoI YGGCCR 2 cut(s) 129, 268
AfiI CCNNNNNNNGG 6 cut(s) 156, 220, 242, 304, 443, 471
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 204, 241
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 2 cut(s) 349, 370
AluI AGCT 2 cut(s) 349, 370
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 3 cut(s) 70, 117, 528
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 3 cut(s) 167, 396, 531
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 5 cut(s) 129, 222, 244, 268, 462
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 412, 422
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspS9I GGNCC 3 cut(s) 222, 245, 359
AsuHPI GGTGA 2 cut(s) 169, 292
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 399, 409
BccI CCATC 1 cut(s) 245
BceAI ACGGC 2 cut(s) 158, 283
BciT130I CCWGG 2 cut(s) 206, 243
BcoDI GTCTC 3 cut(s) 70, 117, 528
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 4 cut(s) 50, 132, 413, 423
BlsI GCNGC 4 cut(s) 51, 133, 414, 424
Bme1390I CCNGG 2 cut(s) 206, 243
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 222, 245, 359
BmiI GGNNCC 2 cut(s) 337, 360
BmrFI CCNGG 2 cut(s) 206, 243
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 453
BoxI GACNNNNGTC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 241, 303
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 220, 242, 304, 443, 471
Bse1I ACTGG 4 cut(s) 67, 448, 457, 502
BseBI CCWGG 2 cut(s) 206, 243
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 241, 303
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 6 cut(s) 156, 220, 242, 304, 443, 471
BseMII CTCAG 2 cut(s) 133, 380
BseNI ACTGG 4 cut(s) 67, 448, 457, 502
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 2 cut(s) 399, 409
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 5 cut(s) 131, 224, 246, 270, 464
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 6 cut(s) 156, 220, 242, 304, 443, 471
BsmAI GTCTC 3 cut(s) 70, 117, 528
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 5 cut(s) 131, 224, 246, 270, 464
Bso31I GGTCTC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 159, 388, 523
BspANI GGCC 5 cut(s) 131, 224, 246, 270, 464
BspCNI CTCAG 2 cut(s) 132, 379
BspDI ATCGAT 1 cut(s) 380
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 337, 360
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 3 cut(s) 167, 396, 531
BspQI GCTCTTC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 70
BsrBI CCGCTC 3 cut(s) 134, 182, 216
BsrI ACTGG 4 cut(s) 67, 448, 457, 502
BssECI CCNNGG 2 cut(s) 241, 303
BssMI GATC 3 cut(s) 159, 388, 523
Bst2UI CCWGG 2 cut(s) 206, 243
Bst6I CTCTTC 3 cut(s) 16, 120, 189
BstC8I GCNNGC 2 cut(s) 47, 88
BstDEI CTNAG 3 cut(s) 119, 226, 366
BstENI CCTNNNNNAGG 2 cut(s) 302, 469
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 3 cut(s) 162, 391, 526
BstMAI GTCTC 3 cut(s) 70, 117, 528
BstMBI GATC 3 cut(s) 159, 388, 523
BstMWI GCNNNNNNNGC 6 cut(s) 42, 96, 170, 179, 252, 276
BstNI CCWGG 2 cut(s) 206, 243
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 2 cut(s) 204, 241
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 399, 409
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 5 cut(s) 131, 224, 246, 270, 464
BsuTUI ATCGAT 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 47, 88
Cfr13I GGNCC 3 cut(s) 222, 245, 359
ClaI ATCGAT 1 cut(s) 380
CviAII CATG 1 cut(s) 219
DdeI CTNAG 3 cut(s) 119, 226, 366
DpnI GATC 3 cut(s) 161, 390, 525
DpnII GATC 3 cut(s) 159, 388, 523
EaeI YGGCCR 2 cut(s) 129, 268
Eam1104I CTCTTC 3 cut(s) 16, 120, 189
EarI CTCTTC 3 cut(s) 16, 120, 189
EciI GGCGGA 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 135
EcoNI CCTNNNNNAGG 2 cut(s) 302, 469
EcoRII CCWGG 2 cut(s) 204, 241
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 1 cut(s) 222
FaiI YATR 5 cut(s) 220, 333, 431, 440, 544
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 218
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 4 cut(s) 50, 132, 413, 423
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 4 cut(s) 50, 132, 413, 423
FspBI CTAG 1 cut(s) 527
GluI GCNGC 4 cut(s) 50, 132, 413, 423
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 5 cut(s) 131, 224, 246, 270, 464
Hin1II CATG 1 cut(s) 222
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 3 cut(s) 110, 364, 394
HphI GGTGA 2 cut(s) 169, 292
Hpy166II GTNNAC 2 cut(s) 211, 477
Hpy188I TCNGA 2 cut(s) 122, 393
Hpy188III TCNNGA 3 cut(s) 75, 137, 157
Hpy8I GTNNAC 2 cut(s) 211, 477
Hpy99I CGWCG 2 cut(s) 34, 76
HpyAV CCTTC 3 cut(s) 160, 290, 465
HpyCH4V TGCA 2 cut(s) 211, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 96, 170, 179, 252, 276
HpyF3I CTNAG 3 cut(s) 119, 226, 366
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 3 cut(s) 159, 388, 523
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 195, 341
Lsp1109I GCAGC 2 cut(s) 399, 409
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 175
MalI GATC 3 cut(s) 161, 390, 525
MbiI CCGCTC 3 cut(s) 134, 182, 216
MboI GATC 3 cut(s) 159, 388, 523
MboII GAAGA 9 cut(s) 3, 6, 9, 12, 15, 18, 107, 176, 483
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 213
MlyI GAGTC 2 cut(s) 358, 388
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 8 cut(s) 19, 164, 258, 268, 298, 308, 441, 532
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 206, 243
MvaI CCWGG 2 cut(s) 206, 243
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 6 cut(s) 42, 96, 170, 179, 252, 276
NdeII GATC 3 cut(s) 159, 388, 523
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 2 cut(s) 337, 360
NmuCI GTSAC 1 cut(s) 175
OliI CACNNNNGTG 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 4 cut(s) 51, 133, 414, 424
PleI GAGTC 2 cut(s) 358, 388
PpsI GAGTC 2 cut(s) 358, 388
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 204, 241
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 204, 241
PspN4I GGNNCC 2 cut(s) 337, 360
PspPI GGNCC 3 cut(s) 222, 245, 359
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 4 cut(s) 50, 132, 413, 423
Sau3AI GATC 3 cut(s) 159, 388, 523
Sau96I GGNCC 3 cut(s) 222, 245, 359
SchI GAGTC 2 cut(s) 358, 388
ScrFI CCNGG 2 cut(s) 206, 243
SduI GDGCHC 1 cut(s) 213
SetI ASST 6 cut(s) 210, 300, 309, 351, 372, 476
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 359
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 135, 416
SmoI CTYRAG 2 cut(s) 135, 416
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 204, 241
TaqI TCGA 3 cut(s) 74, 136, 380
TaqII GACCGA 1 cut(s) 376
TauI GCSGC 2 cut(s) 52, 134
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 412, 422
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 328
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 2 cut(s) 302, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 135
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.