Rw0G011020

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00476
OG0003955
Physical Location & Seq
Forward (+)
336 .. 3956
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011020.1

Sequence Viewer

Length: 1038 bp
ATGGGTAAAGATAGTGTTGACAGTAGATTATTTTCTCAACACATGGCTTTTACCATGTTAGGAGCCACCCTCTTTGGAGATGCATTTTTAGCTTGGTCTAAGGCAGCTGTTTACGAGGAGCTCCTTATGATGATTGCTAAGGATGCTGGTTTTTGGGCTTCTTATTGTGTTACTCCCTTTTGGAAGCCTGGATTTTGGAAATATCAGTCTGTATGCACAAAGTTGAAATGCTTAACGCAAGATATTGTTCAACAATGCTGCAACCTATACTCTTGGGAAACTGGAAACTTAGGAAAGGAGGTTTCATCTGGTGGACCATCTTGCTCTGAAGTTAGGATAGTAGACAATCTATTCTATGAGGAGCTTAATGGCCATTTTAATGTTAGTGAGGAACCATATGGGAATCTTATGGGCATAATGTTTCATGGATGCCTCAGCACAGCTAGTTTGATTAATAACATTATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGTTGGTCTTATTACTGGCAACTATTTACGAATCTGCTCGTCTTGTGTCAGCCGGGTCTTTGCTACAGAGATGTTCTCTCAAACATGATTTTTCGCTTAAGAGTGGTCATACCATACCAGCTGGAGCAGGATTGGTTGTGCCTGTAGAGCTGGTAATGATGGATGATTCCACTTTGGGAGGCGATGCTAGTGAATTCAATCCATACCGCTTTTTGTCGAAGGCTGGAGAGGGATCTGATATATTTCTAAGAAAATCATTTTCAGGTTTCATTTCCTACTTATTCTATTGCCAACTAAGTTTCTCCTTCACTTTGAATGATCCAAATAAAAGTACAGCATTTCTTCCCTTTGGCTCTGGTATACGTGCCTGCGTTGGGCAGAAATTTGTAACTGAAGGAGTTGCAATGTTGTTCGCGTCATTGCTCAAACAGTATGAGATAAAGCTCCATCCAGAAGCTCAGGATACCTCAAAACCAAATAACTTTGGGTTTCAGCTTCTTTTGAGTTCACATATAGTTTTTGTAGAAAGGAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

345

Amino Acids

38.21

Weight (kDa)

5.91

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 167 - 330 2.4e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 342, 859
AccII CGCG 1 cut(s) 914
AciI CCGC 1 cut(s) 706
AclWI GGATC 2 cut(s) 739, 812
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 692, 881
AcuI CTGAAG 2 cut(s) 348, 912
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 1 cut(s) 873
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 4 cut(s) 226, 251, 697, 814
AjnI CCWGG 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 2 cut(s) 739, 812
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 104, 258
ApoI RAATTY 2 cut(s) 692, 881
AseI ATTAAT 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 116, 245
BccI CCATC 3 cut(s) 325, 652, 954
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 955
BcnI CCSGG 1 cut(s) 553
BfaI CTAG 2 cut(s) 444, 687
BfmI CTRYAG 2 cut(s) 563, 642
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 2 cut(s) 105, 259
BlsI GCNGC 2 cut(s) 106, 260
Bme1390I CCNGG 2 cut(s) 189, 553
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 64, 393
BmrFI CCNGG 2 cut(s) 189, 553
BmsI GCATC 5 cut(s) 70, 133, 419, 490, 673
BplI GAGNNNNNCTC 4 cut(s) 54, 86, 559, 591
BpmI CTGGAG 2 cut(s) 642, 744
Bpu10I CCTNAGC 3 cut(s) 138, 434, 957
BpuMI CCSGG 1 cut(s) 553
BsaAI YACGTR 1 cut(s) 863
Bsc4I CCNNNNNNNGG 1 cut(s) 873
Bse1I ACTGG 2 cut(s) 286, 519
Bse3DI GCAATG 2 cut(s) 909, 917
BseBI CCWGG 1 cut(s) 189
BseGI GGATG 5 cut(s) 148, 434, 481, 667, 946
BseLI CCNNNNNNNGG 1 cut(s) 873
BseMI GCAATG 2 cut(s) 909, 917
BseMII CTCAG 2 cut(s) 448, 971
BseNI ACTGG 2 cut(s) 286, 519
BseRI GAGGAG 2 cut(s) 131, 374
BseXI GCAGC 2 cut(s) 116, 245
Bsh1236I CGCG 1 cut(s) 914
BshFI GGCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 552
BslI CCNNNNNNNGG 1 cut(s) 873
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 731, 817
BspACI CCGC 1 cut(s) 706
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 447, 970
BspFNI CGCG 1 cut(s) 914
BspLI GGNNCC 2 cut(s) 64, 393
BspPI GGATC 2 cut(s) 739, 812
BspTI CTTAAG 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 909, 917
BsrI ACTGG 2 cut(s) 286, 519
BssMI GATC 2 cut(s) 731, 817
BssNAI GTATAC 1 cut(s) 860
Bst1107I GTATAC 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 23, 930
BstAFI CTTAAG 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 863
BstC8I GCNNGC 1 cut(s) 868
BstDEI CTNAG 7 cut(s) 99, 138, 289, 434, 746, 794, 957
BstF5I GGATG 5 cut(s) 148, 434, 481, 667, 946
BstFNI CGCG 1 cut(s) 914
BstKTI GATC 2 cut(s) 734, 820
BstMBI GATC 2 cut(s) 731, 817
BstMWI GCNNNNNNNGC 3 cut(s) 89, 143, 646
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 187, 551
BstSFI CTRYAG 2 cut(s) 563, 642
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 2 cut(s) 116, 245
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BstZ17I GTATAC 1 cut(s) 860
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 696
BtsCI GGATG 5 cut(s) 148, 434, 481, 667, 946
Cac8I GCNNGC 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 903
Csp6I GTAC 1 cut(s) 831
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 4 cut(s) 43, 55, 425, 584
CviQI GTAC 1 cut(s) 831
DdeI CTNAG 7 cut(s) 99, 138, 289, 434, 746, 794, 957
DpnI GATC 2 cut(s) 733, 819
DpnII GATC 2 cut(s) 731, 817
EaeI YGGCCR 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 348, 912
EcoICRI GAGCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 4 cut(s) 46, 58, 428, 587
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 4 cut(s) 42, 54, 424, 583
FauNDI CATATG 1 cut(s) 397
FblI GTMKAC 2 cut(s) 342, 859
Fnu4HI GCNGC 2 cut(s) 105, 259
FokI GGATG 5 cut(s) 155, 441, 468, 674, 933
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 105, 259
FspBI CTAG 2 cut(s) 444, 687
GluI GCNGC 2 cut(s) 105, 259
GsuI CTGGAG 2 cut(s) 642, 744
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 552
HgaI GACGC 1 cut(s) 903
Hin1II CATG 4 cut(s) 46, 58, 428, 587
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 403, 530, 665
HpaII CCGG 1 cut(s) 552
Hpy166II GTNNAC 6 cut(s) 19, 112, 314, 343, 860, 1007
Hpy188I TCNGA 2 cut(s) 328, 736
Hpy188III TCNNGA 2 cut(s) 950, 959
Hpy8I GTNNAC 6 cut(s) 19, 112, 314, 343, 860, 1007
HpyAV CCTTC 3 cut(s) 712, 814, 887
HpyCH4III ACNGT 2 cut(s) 23, 930
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 4 cut(s) 83, 216, 261, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 143, 646
HpyF3I CTNAG 7 cut(s) 99, 138, 289, 434, 746, 794, 957
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 4 cut(s) 46, 58, 428, 587
Kzo9I GATC 2 cut(s) 731, 817
LmnI GCTCC 6 cut(s) 62, 118, 126, 361, 623, 948
Lsp1109I GCAGC 2 cut(s) 116, 245
LweI GCATC 5 cut(s) 70, 133, 419, 490, 673
MaeI CTAG 2 cut(s) 444, 687
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 2 cut(s) 169, 886
MalI GATC 2 cut(s) 733, 819
MboI GATC 2 cut(s) 731, 817
MboII GAAGA 1 cut(s) 833
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 692, 881
MluNI TGGCCA 1 cut(s) 372
MnlI CCTC 9 cut(s) 80, 109, 292, 352, 382, 443, 671, 721, 976
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 85
MscI TGGCCA 1 cut(s) 372
MseI TTAA 5 cut(s) 233, 366, 378, 453, 597
MslI CAYNNNNRTG 2 cut(s) 378, 464
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 3 cut(s) 107, 620, 1035
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 2 cut(s) 189, 553
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 3 cut(s) 89, 143, 646
NciI CCSGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 397
NdeII GATC 2 cut(s) 731, 817
NlaIII CATG 4 cut(s) 46, 58, 428, 587
NlaIV GGNNCC 2 cut(s) 64, 393
NsiI ATGCAT 1 cut(s) 85
PfeI GAWTC 3 cut(s) 403, 530, 665
PkrI GCNGC 2 cut(s) 106, 260
Ppu21I YACGTR 1 cut(s) 863
PshBI ATTAAT 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 64, 393
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 731
PvuII CAGCTG 3 cut(s) 107, 620, 1035
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 2 cut(s) 378, 464
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 5 cut(s) 233, 366, 378, 453, 597
SatI GCNGC 2 cut(s) 105, 259
Sau3AI GATC 2 cut(s) 731, 817
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 2 cut(s) 189, 553
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 5 cut(s) 70, 133, 419, 490, 673
SfcI CTRYAG 2 cut(s) 563, 642
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 378, 464
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 2 cut(s) 692, 881
SsiI CCGC 1 cut(s) 706
SspMI CTAG 2 cut(s) 444, 687
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 187, 551
TaaI ACNGT 2 cut(s) 23, 930
TaiI ACGT 1 cut(s) 865
TaqI TCGA 1 cut(s) 716
TasI AATT 2 cut(s) 692, 881
TatI WGTACW 1 cut(s) 830
TfiI GAWTC 3 cut(s) 403, 530, 665
Tru1I TTAA 5 cut(s) 233, 366, 378, 453, 597
Tru9I TTAA 5 cut(s) 233, 366, 378, 453, 597
TseI GCWGC 2 cut(s) 104, 258
TspDTI ATGAA 4 cut(s) 294, 413, 482, 757
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 314
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 2 cut(s) 692, 881
XmiI GTMKAC 2 cut(s) 342, 859
XspI CTAG 2 cut(s) 444, 687
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.