Rh1DG095000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003955
Physical Location & Seq
Forward (+)
18001557 .. 18004796
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG095000.1

Sequence Viewer

Length: 693 bp
ATGGGCATAATGTTTCACGGATGCCTCAGCACAGCTAGTTTGATTAATAACATTATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGATCTACTCGGAGTTAACTATGGCACAAAAAGATGCAATGAAGGAAGACCAGATTAGTGCTGATAAGTTGGTCTTATTACTGGCAACTATTTACGAATCTGCTCGTCTTGTGTCAGCCGGGTCTTTGCTACAGAGATGTTCTCTCAAACATGATTTTTCGCTTAAGAGTGGTCATACCATACCAGCTGGAGCAGGATTGGTTGTGCCTGTAGAGCTGGTAATGATGGATGATTCCACTTTGGGAGGCGATGCTAGTGAATTCAATCCATACCGCTTTTTGTTGAAGGCTGGAGAGGGATCTGATATATTTCTAAGAAAATCATTTTCAGGGGCTGCTCAGAAGTTTGTGAATCTGGGAGAGAGCTCCTTCACTTTGAATGATCCAAATAAAAGTACAGCGTTTCTTCCCTTTGGCTCTGGTATACGTGCCTGCGTTGGGCAGAAATTTGTAACTGAAGGAGTTGCAATGTTGTTAGCGTCATTGCTCAAACAGTATGAGATAAAGCTCCATCCAGAAGCTCAGGATACCTCAAAACCAAATAACTTTGGGTTTCAGCTTCTTTCGAGTTCACATATAGTTTTTGTAGAAAGGAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

230

Amino Acids

25.0

Weight (kDa)

6.3

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 220 6.4e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 514
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 397, 467
AcsI RAATTY 2 cut(s) 350, 536
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 528
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 355, 376, 469
AluBI AGCT 8 cut(s) 35, 278, 307, 456, 598, 611, 649, 690
AluI AGCT 8 cut(s) 35, 278, 307, 456, 598, 611, 649, 690
Alw21I GWGCWC 1 cut(s) 458
AlwI GGATC 2 cut(s) 397, 467
AlwNI CAGNNNCTG 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 350, 536
AseI ATTAAT 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 211
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 310, 609
BciVI GTATCC 1 cut(s) 610
BcnI CCSGG 1 cut(s) 211
BfaI CTAG 2 cut(s) 36, 345
BfmI CTRYAG 2 cut(s) 221, 300
BfrI CTTAAG 1 cut(s) 254
BfuI GTATCC 1 cut(s) 610
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 4 cut(s) 11, 82, 115, 331
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 2 cut(s) 300, 402
Bpu10I CCTNAGC 2 cut(s) 26, 612
BpuMI CCSGG 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 518
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 3 cut(s) 135, 564, 572
BseGI GGATG 4 cut(s) 26, 73, 325, 601
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 3 cut(s) 135, 564, 572
BseMII CTCAG 3 cut(s) 40, 443, 626
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 3 cut(s) 93, 389, 472
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 3 cut(s) 39, 442, 625
BspPI GGATC 2 cut(s) 397, 467
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 3 cut(s) 135, 564, 572
BsrI ACTGG 1 cut(s) 177
BssMI GATC 3 cut(s) 93, 389, 472
BssNAI GTATAC 1 cut(s) 515
Bst1107I GTATAC 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 585
BstAFI CTTAAG 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 4 cut(s) 26, 404, 429, 612
BstF5I GGATG 4 cut(s) 26, 73, 325, 601
BstKTI GATC 3 cut(s) 96, 392, 475
BstMBI GATC 3 cut(s) 93, 389, 472
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 221, 300
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 93, 389
BstYI RGATCY 2 cut(s) 93, 389
BstZ17I GTATAC 1 cut(s) 515
BsuI GTATCC 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 4 cut(s) 26, 73, 325, 601
Cac8I GCNNGC 1 cut(s) 523
CaiI CAGNNNCTG 1 cut(s) 425
CseI GACGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 486
CviAII CATG 1 cut(s) 242
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 4 cut(s) 26, 404, 429, 612
DpnI GATC 3 cut(s) 95, 391, 474
DpnII GATC 3 cut(s) 93, 389, 472
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 567
EcoICRI GAGCTC 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 458
FaeI CATG 1 cut(s) 245
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 4 cut(s) 33, 60, 332, 588
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 2 cut(s) 36, 345
GluI GCNGC 1 cut(s) 426
GsuI CTGGAG 2 cut(s) 300, 402
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 558
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 188, 323, 442
HpaI GTTAAC 1 cut(s) 108
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 108, 515, 662
Hpy188I TCNGA 3 cut(s) 103, 394, 432
Hpy188III TCNNGA 2 cut(s) 605, 614
Hpy8I GTNNAC 3 cut(s) 108, 515, 662
HpyAV CCTTC 4 cut(s) 127, 370, 469, 542
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 2 cut(s) 128, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 4 cut(s) 26, 404, 429, 612
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 1 cut(s) 245
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 93, 389, 472
LmnI GCTCC 3 cut(s) 281, 461, 603
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 4 cut(s) 11, 82, 115, 331
MaeI CTAG 2 cut(s) 36, 345
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 541
MalI GATC 3 cut(s) 95, 391, 474
MboI GATC 3 cut(s) 93, 389, 472
MboII GAAGA 2 cut(s) 149, 488
MflI RGATCY 2 cut(s) 93, 389
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 2 cut(s) 350, 536
MnlI CCTC 4 cut(s) 35, 329, 379, 631
MseI TTAA 3 cut(s) 45, 107, 255
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 278, 690
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 304
NciI CCSGG 1 cut(s) 211
NdeII GATC 3 cut(s) 93, 389, 472
NlaIII CATG 1 cut(s) 245
PfeI GAWTC 3 cut(s) 188, 323, 442
PkrI GCNGC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 458
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 93, 389
PvuII CAGCTG 2 cut(s) 278, 690
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 458
SaqAI TTAA 3 cut(s) 45, 107, 255
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 93, 389, 472
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 4 cut(s) 11, 82, 115, 331
SfcI CTRYAG 2 cut(s) 221, 300
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 350, 536
SsiI CCGC 1 cut(s) 364
SspMI CTAG 2 cut(s) 36, 345
SstI GAGCTC 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 520
TaqI TCGA 1 cut(s) 656
TasI AATT 2 cut(s) 350, 536
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 3 cut(s) 188, 323, 442
Tru1I TTAA 3 cut(s) 45, 107, 255
Tru9I TTAA 3 cut(s) 45, 107, 255
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 74, 146
TspGWI ACGGA 1 cut(s) 33
Vha464I CTTAAG 1 cut(s) 254
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 2 cut(s) 350, 536
XmiI GTMKAC 1 cut(s) 514
XspI CTAG 2 cut(s) 36, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.