Rh1AG091600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003955
Physical Location & Seq
Forward (+)
15926584 .. 15932967
6384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG091600.1

Sequence Viewer

Length: 1281 bp
ATGGCCGCAAACGACAAGTCTCACAAAAAAAGTCCATATCGCAAAAGCCCTCGTCTTCAGAGCAGAGTCTTATCCTTCAGCATCACTGCAGCAATAAACAAAGATTCTCCAAACTGTTATTATTGGGATATGAAACCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTCCTTCTTCTTCGTCATGCGGATCAAACACGCTCTTAACGATTCTGTTCCAGTCGAGATCCGAAGCCTGCAGCAACGATTCTCTTCTCAGAGACTTGGTCGCCAGAGAATTCAACGCCTTCCTCTGGATCTCTCTCATCGCCGTCACCGCTCTGTTGCTCCGGAAGCTCTTCGACCTGCTTCGCTTATGGGCCAAAGCCAAGCCCATCCCTGGGCCTCCTTGCCCCTCTTTCTACGGCCACTCCAACCTCCTTTCCCGCCAAAATATTACTGAGGTGTTGGGTGATTTGCACAAGAGATATGGCCCTGTTGTGAAGTTGTGGTTGGGACCGACTCGGCTTTTAGTGTCAATAAAGGATCCAATTCTAATCAAAGAGATGCTACTAAAGGCTGCGGATAAGTTACCTATGACTGGGAGGGCATTCCATTTGGCCTTTGGAAGGTCGAGTCTCTTTGCTTCTTCTTTCGACGAGGTGCAAAAGAGAAGGGAAACATTATTAACAGAATTAAATGGAAAACTTTGTGAGAACAAAAATGTGTTCCCCACCAAGGCTGTGGACTGTGTCTTGGAGAGGATAAACAATGTAATGGGTCAAGATAGTGTTGACAGTAAAGTAGTTTCTCAACACGTGGCTTTTACCATATTAGGGGCCACCCTCTTTGGAGATGCATTTCTAGCTTGGTCTAAGGCAGCTGTTTACGAGGAGCTCCTTATGATGATTGCTAAGGATGCTGGTTTTTGGGCTTCTTATTGTGTTACTCCCTTTTGGAAGCGTGGATTTTGGAAGTATCAATCTGTATGCACAAAGTTGAAATGCTTAACGCAAGATATTGTTCAACAGTGCTGCAACCTATACCCTTGGGAAGCTGGAAACTTCGGAAAGGAGGTTGTATGTGGTGGACCATCTTGCTCTGAAGTTAGGATAGCAGACAATCTATTCTTTGAGGAGCTTAATGGCCATTTTAATGGCAGCAAAGAACAATATGGGAATCTTATGGGCATAATGTTTCACGGATGCCTCAGCACAGCTAGTTTGATTAACAACATTATGATGAACCTTGCTACACATCCACAAATACAGGATAAGGTCCCTCTCTCTCTCTCTCTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

426

Amino Acids

47.44

Weight (kDa)

9.03

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 127 - 419 1.6e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 5 cut(s) 6, 186, 315, 424, 560
AclWI GGATC 5 cut(s) 196, 219, 302, 518, 531
AcoI YGGCCR 3 cut(s) 3, 403, 1123
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 3 cut(s) 41, 61, 1101
AcvI CACGTG 1 cut(s) 796
AfiI CCNNNNNNNGG 7 cut(s) 291, 377, 378, 578, 606, 715, 813
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 3 cut(s) 280, 979, 1004
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 7 cut(s) 334, 845, 860, 874, 1034, 1117, 1196
AluI AGCT 7 cut(s) 334, 845, 860, 874, 1034, 1117, 1196
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 3 cut(s) 24, 252, 620
AlwI GGATC 5 cut(s) 196, 219, 302, 518, 531
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 8 cut(s) 3, 357, 380, 403, 469, 597, 816, 1123
ApeKI GCWGC 6 cut(s) 89, 237, 557, 857, 1011, 1137
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 335
AspS9I GGNCC 7 cut(s) 357, 380, 470, 494, 816, 1067, 1255
AsuHPI GGTGA 2 cut(s) 304, 461
AvaII GGWCC 3 cut(s) 494, 1067, 1255
BalI TGGCCA 1 cut(s) 1125
BamHI GGATCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 876
BbrPI CACGTG 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 876
BbvCI CCTCAGC 1 cut(s) 1187
BbvI GCAGC 6 cut(s) 101, 249, 544, 869, 998, 1149
BccI CCATC 2 cut(s) 380, 1078
BceAI ACGGC 2 cut(s) 293, 418
BciT130I CCWGG 1 cut(s) 378
BcoDI GTCTC 3 cut(s) 24, 252, 620
BfaI CTAG 2 cut(s) 842, 1197
BfmI CTRYAG 2 cut(s) 87, 235
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 7 cut(s) 6, 90, 238, 558, 858, 1012, 1138
BlsI GCNGC 7 cut(s) 7, 91, 239, 559, 859, 1013, 1139
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 494, 1067, 1255
BmgT120I GGNCC 7 cut(s) 357, 380, 470, 494, 816, 1067, 1255
BmiI GGNNCC 4 cut(s) 495, 525, 817, 1257
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 5 cut(s) 90, 534, 823, 886, 1172
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 2 cut(s) 891, 1187
BsaAI YACGTR 1 cut(s) 796
BsaJI CCNNGG 4 cut(s) 376, 377, 714, 1025
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 7 cut(s) 291, 377, 378, 578, 606, 715, 813
Bse1I ACTGG 2 cut(s) 217, 583
BseAI TCCGGA 1 cut(s) 327
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 376, 377, 714, 1025
BseGI GGATG 4 cut(s) 372, 901, 1187, 1234
BseLI CCNNNNNNNGG 7 cut(s) 291, 377, 378, 578, 606, 715, 813
BseMII CTCAG 3 cut(s) 268, 429, 1201
BseNI ACTGG 2 cut(s) 217, 583
BseRI GAGGAG 8 cut(s) 130, 133, 136, 139, 142, 145, 884, 1127
BseXI GCAGC 6 cut(s) 101, 249, 544, 869, 998, 1149
BshFI GGCC 8 cut(s) 5, 359, 382, 405, 471, 599, 818, 1125
BsiHKAI GWGCWC 1 cut(s) 876
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 2 cut(s) 507, 1241
BslI CCNNNNNNNGG 7 cut(s) 291, 377, 378, 578, 606, 715, 813
BsmAI GTCTC 3 cut(s) 24, 252, 620
BsmFI GGGAC 2 cut(s) 507, 1241
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 8 cut(s) 5, 359, 382, 405, 471, 599, 818, 1125
Bsp1286I GDGCHC 1 cut(s) 876
Bsp13I TCCGGA 1 cut(s) 327
Bsp143I GATC 4 cut(s) 188, 224, 294, 523
BspACI CCGC 5 cut(s) 6, 186, 315, 424, 560
BspANI GGCC 8 cut(s) 5, 359, 382, 405, 471, 599, 818, 1125
BspCNI CTCAG 3 cut(s) 267, 430, 1200
BspEI TCCGGA 1 cut(s) 327
BspLI GGNNCC 4 cut(s) 495, 525, 817, 1257
BspMAI CTGCAG 2 cut(s) 91, 239
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 5 cut(s) 196, 219, 302, 518, 531
BspQI GCTCTTC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 317
BsrI ACTGG 2 cut(s) 217, 583
BssECI CCNNGG 4 cut(s) 376, 377, 714, 1025
BssMI GATC 4 cut(s) 188, 224, 294, 523
BssT1I CCWWGG 2 cut(s) 714, 1025
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 116, 728, 776, 1008
Bst6I CTCTTC 3 cut(s) 163, 255, 341
BstBAI YACGTR 1 cut(s) 796
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 5 cut(s) 254, 438, 852, 891, 1187
BstENI CCTNNNNNAGG 1 cut(s) 604
BstF5I GGATG 4 cut(s) 372, 901, 1187, 1234
BstKTI GATC 4 cut(s) 191, 227, 297, 526
BstMAI GTCTC 3 cut(s) 24, 252, 620
BstMBI GATC 4 cut(s) 188, 224, 294, 523
BstMWI GCNNNNNNNGC 4 cut(s) 314, 331, 842, 896
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 2 cut(s) 87, 235
BstV1I GCAGC 6 cut(s) 101, 249, 544, 869, 998, 1149
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 3 cut(s) 224, 294, 523
BstXI CCANNNNNNTGG 2 cut(s) 721, 1133
BstYI RGATCY 3 cut(s) 224, 294, 523
BsuRI GGCC 8 cut(s) 5, 359, 382, 405, 471, 599, 818, 1125
BtgZI GCGATG 1 cut(s) 289
BtsCI GGATG 4 cut(s) 372, 901, 1187, 1234
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 1013
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 7 cut(s) 357, 380, 470, 494, 816, 1067, 1255
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviAII CATG 1 cut(s) 183
DdeI CTNAG 5 cut(s) 254, 438, 852, 891, 1187
DpnI GATC 4 cut(s) 190, 226, 296, 525
DpnII GATC 4 cut(s) 188, 224, 294, 523
EaeI YGGCCR 3 cut(s) 3, 403, 1123
Eam1104I CTCTTC 3 cut(s) 163, 255, 341
EarI CTCTTC 3 cut(s) 163, 255, 341
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 714, 1025
Eco24I GRGCYC 1 cut(s) 876
Eco47I GGWCC 3 cut(s) 494, 1067, 1255
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 3 cut(s) 41, 61, 1101
Eco72I CACGTG 1 cut(s) 796
EcoICRI GAGCTC 1 cut(s) 874
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 1255
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 714, 1025
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 2 cut(s) 714, 1025
FaeI CATG 1 cut(s) 186
FaqI GGGAC 2 cut(s) 507, 1241
FatI CATG 1 cut(s) 182
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 7 cut(s) 6, 90, 238, 558, 858, 1012, 1138
FokI GGATG 4 cut(s) 359, 908, 1194, 1221
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 7 cut(s) 6, 90, 238, 558, 858, 1012, 1138
FspBI CTAG 2 cut(s) 842, 1197
GluI GCNGC 7 cut(s) 6, 90, 238, 558, 858, 1012, 1138
HaeIII GGCC 8 cut(s) 5, 359, 382, 405, 471, 599, 818, 1125
HapII CCGG 1 cut(s) 328
Hin1II CATG 1 cut(s) 186
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 7 cut(s) 66, 104, 208, 245, 499, 613, 1156
HpaII CCGG 1 cut(s) 328
HphI GGTGA 2 cut(s) 304, 461
Hpy166II GTNNAC 4 cut(s) 724, 772, 865, 1067
Hpy188I TCNGA 5 cut(s) 60, 229, 257, 1046, 1081
Hpy188III TCNNGA 4 cut(s) 222, 292, 328, 761
Hpy8I GTNNAC 4 cut(s) 724, 772, 865, 1067
Hpy99I CGWCG 1 cut(s) 638
HpyAV CCTTC 5 cut(s) 85, 180, 295, 600, 645
HpyCH4III ACNGT 4 cut(s) 116, 728, 776, 1008
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 7 cut(s) 89, 237, 457, 643, 836, 969, 1014
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 331, 842, 896
HpyF3I CTNAG 5 cut(s) 254, 438, 852, 891, 1187
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 327
Kzo9I GATC 4 cut(s) 188, 224, 294, 523
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 4 cut(s) 330, 871, 879, 1114
Lsp1109I GCAGC 6 cut(s) 101, 249, 544, 869, 998, 1149
LweI GCATC 5 cut(s) 90, 534, 823, 886, 1172
MaeI CTAG 2 cut(s) 842, 1197
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 3 cut(s) 310, 567, 922
MalI GATC 4 cut(s) 190, 226, 296, 525
MbiI CCGCTC 1 cut(s) 317
MboI GATC 4 cut(s) 188, 224, 294, 523
MboII GAAGA 9 cut(s) 47, 150, 153, 156, 165, 168, 242, 328, 618
MflI RGATCY 3 cut(s) 224, 294, 523
MhlI GDGCHC 1 cut(s) 876
MlsI TGGCCA 1 cut(s) 1125
MluCI AATT 3 cut(s) 275, 528, 671
MluNI TGGCCA 1 cut(s) 1125
MlyI GAGTC 3 cut(s) 75, 493, 622
MmeI TCCRAC 1 cut(s) 435
Mox20I TGGCCA 1 cut(s) 1125
Mph1103I ATGCAT 1 cut(s) 838
MroI TCCGGA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 335
MscI TGGCCA 1 cut(s) 1125
MseI TTAA 7 cut(s) 203, 665, 674, 986, 1119, 1131, 1206
MslI CAYNNNNRTG 2 cut(s) 1131, 1217
Msp20I TGGCCA 1 cut(s) 1125
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 314, 331, 842, 896
NdeII GATC 4 cut(s) 188, 224, 294, 523
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 4 cut(s) 495, 525, 817, 1257
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 838
PasI CCCWGGG 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 4 cut(s) 104, 208, 245, 1156
PflFI GACNNNGTC 2 cut(s) 263, 728
PkrI GCNGC 7 cut(s) 7, 91, 239, 559, 859, 1013, 1139
PleI GAGTC 3 cut(s) 74, 493, 621
PmaCI CACGTG 1 cut(s) 796
PmlI CACGTG 1 cut(s) 796
PpsI GAGTC 3 cut(s) 74, 493, 621
Ppu21I YACGTR 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 1255
Psp124BI GAGCTC 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 1255
Psp6I CCWGG 1 cut(s) 376
PspCI CACGTG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 4 cut(s) 495, 525, 817, 1257
PspPI GGNCC 7 cut(s) 357, 380, 470, 494, 816, 1067, 1255
PspPPI RGGWCCY 1 cut(s) 1255
PstI CTGCAG 2 cut(s) 91, 239
PsuI RGATCY 3 cut(s) 224, 294, 523
PsyI GACNNNGTC 2 cut(s) 263, 728
PvuII CAGCTG 1 cut(s) 860
RseI CAYNNNNRTG 2 cut(s) 1131, 1217
SacI GAGCTC 1 cut(s) 876
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 7 cut(s) 203, 665, 674, 986, 1119, 1131, 1206
SatI GCNGC 7 cut(s) 6, 90, 238, 558, 858, 1012, 1138
Sau3AI GATC 4 cut(s) 188, 224, 294, 523
Sau96I GGNCC 7 cut(s) 357, 380, 470, 494, 816, 1067, 1255
SchI GAGTC 3 cut(s) 75, 493, 622
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 5 cut(s) 90, 534, 823, 886, 1172
SfcI CTRYAG 2 cut(s) 87, 235
SinI GGWCC 3 cut(s) 494, 1067, 1255
SmiMI CAYNNNNRTG 2 cut(s) 1131, 1217
Sse9I AATT 3 cut(s) 275, 528, 671
SsiI CCGC 5 cut(s) 6, 186, 315, 424, 560
SspI AATATT 1 cut(s) 433
SspMI CTAG 2 cut(s) 842, 1197
SstI GAGCTC 1 cut(s) 876
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 2 cut(s) 714, 1025
TaaI ACNGT 4 cut(s) 116, 728, 776, 1008
TaiI ACGT 1 cut(s) 798
TaqI TCGA 4 cut(s) 221, 339, 611, 633
TaqII GACCGA 1 cut(s) 511
TasI AATT 3 cut(s) 275, 528, 671
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 104, 208, 245, 1156
Tru1I TTAA 7 cut(s) 203, 665, 674, 986, 1119, 1131, 1206
Tru9I TTAA 7 cut(s) 203, 665, 674, 986, 1119, 1131, 1206
TscAI CASTG 2 cut(s) 91, 1013
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 6 cut(s) 89, 237, 557, 857, 1011, 1137
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 146, 1235
TspGWI ACGGA 1 cut(s) 1194
TspRI CASTG 2 cut(s) 91, 1013
Tth111I GACNNNGTC 2 cut(s) 263, 728
VpaK11BI GGWCC 3 cut(s) 494, 1067, 1255
XagI CCTNNNNNAGG 1 cut(s) 604
XapI RAATTY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 2 cut(s) 599, 718
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 2 cut(s) 842, 1197
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.