Rroxscaffold_6G00398480

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
20352723 .. 20356297
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398480.1

Sequence Viewer

Length: 309 bp
ATGATGAACCTTGCTACGCATACACAAATACAGGATAAGATCTACTCGGAGGTAACTATGGCACGAAAAGATACAATGAAAGAAGACCAGATTAATGGTGATAAGATGATTTTTCCGGCAACGCTCACTCGGCACTCATCACTTCGATTCAGCACTTCTCGCACCCTCTTGGCTTCGGCAGAGGCGACCGCAGCGGCTGCTGTGTGGAAGAGCTTGGACGGCGACGGCTATGTTAGTATTGTAGGAGTTAATGCTTTATTTAATTTTTTGGGTTACACTCTTTTGCCTGTCCATGTGGATTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

6.24

Isoelectric Point (pI)

19.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 189, 194
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 191, 197
AseI ATTAAT 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 184, 203
BceAI ACGGC 2 cut(s) 235, 241
BglII AGATCT 1 cut(s) 39
BisI GCNGC 3 cut(s) 192, 195, 198
BlsI GCNGC 3 cut(s) 193, 196, 199
BpiI GAAGAC 1 cut(s) 90
BseXI GCAGC 2 cut(s) 184, 203
Bsh1285I CGRYCG 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 116
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 2 cut(s) 189, 194
BspQI GCTCTTC 1 cut(s) 203
BssMI GATC 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 5 cut(s) 130, 159, 191, 197, 219
BstV1I GCAGC 2 cut(s) 184, 203
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 197
CviAII CATG 1 cut(s) 293
CviJI RGCY 4 cut(s) 173, 197, 213, 228
CviKI_1 RGCY 4 cut(s) 173, 197, 213, 228
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
FaeI CATG 1 cut(s) 296
FaiI YATR 5 cut(s) 21, 59, 231, 294, 303
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 192, 195, 198
Fsp4HI GCNGC 3 cut(s) 192, 195, 198
GluI GCNGC 3 cut(s) 192, 195, 198
HapII CCGG 1 cut(s) 116
Hin1II CATG 1 cut(s) 296
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 159, 191, 197, 219
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 203
LpnPI CCDG 4 cut(s) 17, 101, 129, 300
Lsp1109I GCAGC 2 cut(s) 184, 203
MaeIII GTNAC 2 cut(s) 52, 272
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 95, 220
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 262
MnlI CCTC 3 cut(s) 43, 175, 176
MseI TTAA 3 cut(s) 93, 249, 261
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 116
MwoI GCNNNNNNNGC 5 cut(s) 130, 159, 191, 197, 219
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 296
NmeAIII GCCGAG 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 193, 196, 199
PshBI ATTAAT 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 93, 249, 261
SatI GCNGC 3 cut(s) 192, 195, 198
Sau3AI GATC 1 cut(s) 39
SetI ASST 3 cut(s) 12, 54, 215
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 189, 194
TaqI TCGA 1 cut(s) 145
TasI AATT 1 cut(s) 262
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 93, 249, 261
Tru9I TTAA 3 cut(s) 93, 249, 261
TseI GCWGC 2 cut(s) 191, 197
TspDTI ATGAA 2 cut(s) 20, 92
VspI ATTAAT 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.