Rh2BG406200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003955
Physical Location & Seq
Reverse (-)
57510686 .. 57513124
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406200.1

Sequence Viewer

Length: 276 bp
ATGGCTCTGTGGTTGGGACCAACTCAGCTTTTAGTGTCAATAAAGGATCCAACTCTTATCAGAGTCATGCTACTAAAGGCTGCAAATAAGTTGCCTATGATTGGGAGGGCATTCCATTTGGCCTTTGGAAGGTCAAGTCTCTTTGCTTATTCTTTGGATGAGCTCTTAACATCAATTGGAAACTTCTGCATCTATTCAATTGTTGTTGGAATGGTTATTGGAATATCAGTTGGAACTCAGAGGAGGCCTGCCCATTCTTACTGGTGCCAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

91

Amino Acids

10.11

Weight (kDa)

9.78

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AclWI GGATC 2 cut(s) 41, 54
AfiI CCNNNNNNNGG 2 cut(s) 101, 129
AgsI TTSAA 1 cut(s) 198
AluBI AGCT 2 cut(s) 28, 163
AluI AGCT 2 cut(s) 28, 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 41, 54
AoxI GGCC 2 cut(s) 120, 245
ApeKI GCWGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BamHI GGATCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 274
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 3 cut(s) 18, 48, 266
BmsI GCATC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 129
Bse1I ACTGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 101, 129
BseMII CTCAG 2 cut(s) 38, 251
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 122, 247
BshNI GGYRCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 101, 129
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 2 cut(s) 122, 247
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 2 cut(s) 122, 247
BspCNI CTCAG 2 cut(s) 37, 250
BspLI GGNNCC 3 cut(s) 18, 48, 266
BspPI GGATC 2 cut(s) 41, 54
BspT107I GGYRCC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 266
BssMI GATC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 24, 237
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 2 cut(s) 122, 247
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 17
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 5, 28, 80, 122, 163, 247
CviKI_1 RGCY 6 cut(s) 5, 28, 80, 122, 163, 247
DdeI CTNAG 2 cut(s) 24, 237
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 98
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 274
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 122, 247
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 62, 240
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 83, 189
HpyF3I CTNAG 2 cut(s) 24, 237
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 247, 261
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 274
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MfeI CAATTG 2 cut(s) 174, 198
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 174, 198
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 3 cut(s) 74, 187, 211
MnlI CCTC 3 cut(s) 99, 234, 237
MseI TTAA 1 cut(s) 167
MunI CAATTG 2 cut(s) 174, 198
Mva1269I GAATGC 1 cut(s) 110
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 18, 48, 266
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 18, 48, 266
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 46
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 30, 134, 165
SfaNI GCATC 1 cut(s) 198
SgeI CNNG 3 cut(s) 79, 147, 260
SinI GGWCC 1 cut(s) 17
Sse9I AATT 2 cut(s) 174, 198
SseBI AGGCCT 1 cut(s) 247
SspMI CTAG 1 cut(s) 274
SstI GAGCTC 1 cut(s) 165
StuI AGGCCT 1 cut(s) 247
TasI AATT 2 cut(s) 174, 198
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.