Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002809.1

Orthogroup ID

OG0003955

Physical Location & Seq

Genomic Coordinates Reverse (-)

4526 .. 5412

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggtcgcaaacgacaagtcgttcaaaaaagtccatatcgcaaaaagccgttgtcttcagagcagagtcttattcagcgtcactgcagcaataaacaaagaatctccgaactgttattattgggatatgaaaccctccacctcctcttcttcgtcttcttcttcttcttcttcgccatgcggatcaaacacgctcttaacgattctgttccagtcgagatccgaagcctgcagcaacgattctattctcagagacttggccgccagagaattcaacgccttcctctggatctctctcatcgccgtcaccgctctgttgctccggaagctcttcgacctgcttcgcttatgggccaaagccaagcccatccccgggcctccttgcccctctttctacggccactccaacctcctttcccgccaaaatattactgaggtgttgggtgatttgcacaagaaatatggctctgttgtgaagttgtggttgggaccgactcggcttttagtgtcaataaaggatccaattcttatcaaagagatgctactaaaggctgcagataagttacctatgactgggagggcattccatttggcctttggaaggtcgagtctctttgcttcttctttcgacgaggtatcagcaccttttttcacttcttctgttcttgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

223

Amino Acids

24.55

Weight (kDa)

9.71

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003955)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131
malus_domestica	MD02G1275100.v1.1
prunus_persica	Prupe.2G045900_v2.0.a1 Prupe.2G045900_v2.0.a1
pyrus_communis	pycom02g23520
rosa_chinensis	RchiOBHm_Chr1g0328201 RchiOBHm_Chr5g0059421
rosa_laevigata	RLG00000029936
rosa_multiflora	Rmu_sc0002809.1_g000001 Rmu_sc0004646.1_g000039 Rmu_sc0026230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091240 Rroxscaffold_4G00321720 Rroxscaffold_6G00398480
rosa_rugosa	Rorug01G0074200
rosa_samantha	Rh1AG091600 Rh1BG073600 Rh1BG073900 Rh1CG087800 Rh1CG088000 Rh1DG094900 Rh1DG095000 Rh2BG406200 Rh3AG238100 Rh4DG195500 Rh5BG398600 Rh5DG413900 Rh6AG099200
rosa_wichuraiana	Rw0G011020 Rw1G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	4 cut(s)	180, 261, 309, 418
AclWI	GGATC	5 cut(s)	190, 213, 296, 512, 525
AcoI	YGGCCR	2 cut(s)	258, 397
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	5 cut(s)	285, 371, 372, 572, 600
AgsI	TTSAA	2 cut(s)	25, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	246, 614
AlwI	GGATC	5 cut(s)	190, 213, 296, 512, 525
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	5 cut(s)	258, 351, 374, 397, 591
ApeKI	GCWGC	3 cut(s)	86, 231, 551
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	351, 374, 488
AsuC2I	CCSGG	2 cut(s)	372, 373
AsuHPI	GGTGA	2 cut(s)	298, 455
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	517
BbsI	GAAGAC	2 cut(s)	47, 147
BbvI	GCAGC	3 cut(s)	98, 243, 538
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	3 cut(s)	33, 287, 412
BcnI	CCSGG	2 cut(s)	372, 373
BcoDI	GTCTC	2 cut(s)	246, 614
BfmI	CTRYAG	3 cut(s)	84, 229, 552
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	4 cut(s)	87, 232, 261, 552
BlsI	GCNGC	4 cut(s)	88, 233, 262, 553
Bme1390I	CCNGG	2 cut(s)	372, 373
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	351, 374, 488
BmiI	GGNNCC	2 cut(s)	489, 519
BmrFI	CCNGG	2 cut(s)	372, 373
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	47, 147
BpuMI	CCSGG	2 cut(s)	372, 373
BsaJI	CCNNGG	2 cut(s)	370, 371
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	5 cut(s)	285, 371, 372, 572, 600
Bse1I	ACTGG	2 cut(s)	211, 577
BseAI	TCCGGA	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	370, 371
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	5 cut(s)	285, 371, 372, 572, 600
BseMII	CTCAG	2 cut(s)	262, 423
BseNI	ACTGG	2 cut(s)	211, 577
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	98, 243, 538
BshFI	GGCC	5 cut(s)	260, 353, 376, 399, 593
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	322, 372
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	5 cut(s)	285, 371, 372, 572, 600
BsmAI	GTCTC	2 cut(s)	246, 614
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	5 cut(s)	260, 353, 376, 399, 593
BsoBI	CYCGRG	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	182, 218, 288, 517
BspACI	CCGC	4 cut(s)	180, 261, 309, 418
BspANI	GGCC	5 cut(s)	260, 353, 376, 399, 593
BspCNI	CTCAG	2 cut(s)	261, 424
BspEI	TCCGGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	489, 519
BspMAI	CTGCAG	3 cut(s)	88, 233, 556
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	5 cut(s)	190, 213, 296, 512, 525
BspQI	GCTCTTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	211, 577
BssECI	CCNNGG	2 cut(s)	370, 371
BssMI	GATC	4 cut(s)	182, 218, 288, 517
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	151, 335
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	248, 432
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	4 cut(s)	185, 221, 291, 520
BstMAI	GTCTC	2 cut(s)	246, 614
BstMBI	GATC	4 cut(s)	182, 218, 288, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 325
BstSCI	CCNGG	2 cut(s)	370, 371
BstSFI	CTRYAG	3 cut(s)	84, 229, 552
BstV1I	GCAGC	3 cut(s)	98, 243, 538
BstV2I	GAAGAC	2 cut(s)	47, 147
BstX2I	RGATCY	3 cut(s)	218, 288, 517
BstYI	RGATCY	3 cut(s)	218, 288, 517
BsuRI	GGCC	5 cut(s)	260, 353, 376, 399, 593
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	351, 374, 488
Cfr9I	CCCGGG	1 cut(s)	371
CseI	GACGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	248, 432
DpnI	GATC	4 cut(s)	184, 220, 290, 519
DpnII	GATC	4 cut(s)	182, 218, 288, 517
EaeI	YGGCCR	2 cut(s)	258, 397
Eam1104I	CTCTTC	2 cut(s)	151, 335
EarI	CTCTTC	2 cut(s)	151, 335
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	269
FaeI	CATG	1 cut(s)	180
FaiI	YATR	6 cut(s)	36, 128, 178, 349, 462, 569
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	1 cut(s)	176
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	4 cut(s)	87, 232, 261, 552
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	87, 232, 261, 552
GluI	GCNGC	4 cut(s)	87, 232, 261, 552
HaeIII	GGCC	5 cut(s)	260, 353, 376, 399, 593
HapII	CCGG	2 cut(s)	322, 372
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	6 cut(s)	66, 101, 202, 239, 493, 607
HpaII	CCGG	2 cut(s)	322, 372
HphI	GGTGA	2 cut(s)	298, 455
Hpy188I	TCNGA	4 cut(s)	60, 108, 223, 251
Hpy188III	TCNNGA	3 cut(s)	216, 286, 322
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	2 cut(s)	289, 594
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	86, 231, 451, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 325
HpyF3I	CTNAG	2 cut(s)	248, 432
Hsp92II	CATG	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	321
Kzo9I	GATC	4 cut(s)	182, 218, 288, 517
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	8 cut(s)	224, 241, 271, 277, 335, 350, 385, 558
Lsp1109I	GCAGC	3 cut(s)	98, 243, 538
LweI	GCATC	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	79, 304, 561
MalI	GATC	4 cut(s)	184, 220, 290, 519
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	4 cut(s)	182, 218, 288, 517
MflI	RGATCY	3 cut(s)	218, 288, 517
MluCI	AATT	2 cut(s)	269, 522
MlyI	GAGTC	3 cut(s)	75, 487, 616
MmeI	TCCRAC	1 cut(s)	429
MroI	TCCGGA	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	197
MspI	CCGG	2 cut(s)	322, 372
MspR9I	CCNGG	2 cut(s)	372, 373
Mva1269I	GAATGC	1 cut(s)	581
MwoI	GCNNNNNNNGC	2 cut(s)	308, 325
NciI	CCSGG	2 cut(s)	372, 373
NdeII	GATC	4 cut(s)	182, 218, 288, 517
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	2 cut(s)	489, 519
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	79, 304
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	101, 202, 239
PkrI	GCNGC	4 cut(s)	88, 233, 262, 553
PleI	GAGTC	3 cut(s)	74, 487, 615
PpsI	GAGTC	3 cut(s)	74, 487, 615
PspN4I	GGNNCC	2 cut(s)	489, 519
PspPI	GGNCC	3 cut(s)	351, 374, 488
PstI	CTGCAG	3 cut(s)	88, 233, 556
PsuI	RGATCY	3 cut(s)	218, 288, 517
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	4 cut(s)	87, 232, 261, 552
Sau3AI	GATC	4 cut(s)	182, 218, 288, 517
Sau96I	GGNCC	3 cut(s)	351, 374, 488
SchI	GAGTC	3 cut(s)	75, 487, 616
ScrFI	CCNGG	2 cut(s)	372, 373
SetI	ASST	9 cut(s)	143, 330, 339, 411, 438, 568, 605, 636, 646
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	3 cut(s)	84, 229, 552
SinI	GGWCC	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	269, 522
SsiI	CCGC	4 cut(s)	180, 261, 309, 418
SspI	AATATT	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	370, 371
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	215, 333, 605, 627
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	269, 522
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	3 cut(s)	101, 202, 239
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	79, 304
TseI	GCWGC	3 cut(s)	86, 231, 551
Tsp45I	GTSAC	2 cut(s)	79, 304
TspDTI	ATGAA	1 cut(s)	143
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmaI	CCCGGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.