Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003955

Physical Location & Seq

Genomic Coordinates Reverse (-)

38163815 .. 38165880

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG195500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTCTGTGGTTGGGACCAACTCAGCTTTTAGTGTCAATAAAGGATCCAACTCTTATCAGAGTCATGCTACTAAAGGCTGCAAATAAGTTGCCTATGATTGGGAGGGCATTCCATTTGGCCTTTGGAAGGTCAAGTCTCTTTGCTTATTCTTTGGATGAGAATTTCAAGGGCATTAGTACAGTGATTGTGATTTATTCTGCTCTTATCGAAGAATCACTTCCTGTGACCAAAATTCCTGGTGATGTGGTTTACTTAGGATCAACATGCAAACAAGGAGAACTTTACGGAGTTGTTATTGCAACTAGTATCCATACTTTCTTTCGAAAGTCAGCTGATCTTGTGGAGAAAACTAATACATGCATGTTAGCCATTTCCAACAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04726 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

129

Amino Acids

14.07

Weight (kDa)

8.98

Isoelectric Point (pI)

26.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003955)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131
malus_domestica	MD02G1275100.v1.1
prunus_persica	Prupe.2G045900_v2.0.a1 Prupe.2G045900_v2.0.a1
pyrus_communis	pycom02g23520
rosa_chinensis	RchiOBHm_Chr1g0328201 RchiOBHm_Chr5g0059421
rosa_laevigata	RLG00000029936
rosa_multiflora	Rmu_sc0002809.1_g000001 Rmu_sc0004646.1_g000039 Rmu_sc0026230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091240 Rroxscaffold_4G00321720 Rroxscaffold_6G00398480
rosa_rugosa	Rorug01G0074200
rosa_samantha	Rh1AG091600 Rh1BG073600 Rh1BG073900 Rh1CG087800 Rh1CG088000 Rh1DG094900 Rh1DG095000 Rh2BG406200 Rh3AG238100 Rh4DG195500 Rh5BG398600 Rh5DG413900 Rh6AG099200
rosa_wichuraiana	Rw0G011020 Rw1G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	41, 54, 268
AcsI	RAATTY	2 cut(s)	163, 234
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	101, 129
AgsI	TTSAA	1 cut(s)	169
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	28, 335, 384
AluI	AGCT	3 cut(s)	28, 335, 384
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	3 cut(s)	41, 54, 268
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	163, 234
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	18, 48
BmrFI	CCNGG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 129
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	101, 129
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	101, 129
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	46, 260, 337
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	18, 48
BspPI	GGATC	3 cut(s)	41, 54, 268
BspT104I	TTCGAA	1 cut(s)	325
BssMI	GATC	3 cut(s)	46, 260, 337
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	24, 256
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	49, 263, 340
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	46, 260, 337
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	3 cut(s)	270, 363, 367
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	4 cut(s)	67, 267, 360, 364
CviJI	RGCY	7 cut(s)	5, 28, 80, 122, 335, 371, 384
CviKI_1	RGCY	7 cut(s)	5, 28, 80, 122, 335, 371, 384
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	24, 256
DpnI	GATC	3 cut(s)	48, 262, 339
DpnII	GATC	3 cut(s)	46, 260, 337
Eco47I	GGWCC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	365
FaeI	CATG	4 cut(s)	70, 270, 363, 367
FaiI	YATR	6 cut(s)	68, 98, 268, 315, 361, 365
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 267, 299
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	4 cut(s)	66, 266, 359, 363
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	70, 270, 363, 367
HinfI	GANTC	2 cut(s)	63, 215
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	83, 270, 302, 363
HpyF3I	CTNAG	2 cut(s)	24, 256
Hsp92II	CATG	4 cut(s)	70, 270, 363, 367
Kzo9I	GATC	3 cut(s)	46, 260, 337
LpnPI	CCDG	3 cut(s)	225, 237, 252
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	48, 262, 339
MboI	GATC	3 cut(s)	46, 260, 337
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	163, 234
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	46, 260, 337
NlaIII	CATG	4 cut(s)	70, 270, 363, 367
NlaIV	GGNNCC	2 cut(s)	18, 48
NmuCI	GTSAC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	365
NspI	RCATGY	3 cut(s)	270, 363, 367
NspV	TTCGAA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	18, 48
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	46, 260, 337
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	4 cut(s)	30, 134, 337, 386
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	2 cut(s)	163, 234
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	210, 325
TasI	AATT	2 cut(s)	163, 234
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	163, 234
XceI	RCATGY	3 cut(s)	270, 363, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.