Rroxscaffold_4G00321720

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003955
Physical Location & Seq
Reverse (-)
51331307 .. 51337796
6490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321720.1

Sequence Viewer

Length: 1074 bp
ATGGGTAAAGATAGTGTTGACAGTAAAGTAGTTTCTCAACACCTGGCTTTTACCATATTAGGAGCCACCCTCTTTGGAGATGCATTTCTAGCTTGGTCCAAGGCAGCTGTTTACGAGGAGCTCCTTGTGATGATTGCTAAGGAAGCTGGTTTTTGGGCTTCTTATTGTGTTACTCCCTTTTGGAAGCGTGGATTTTGGAAGTATCAGTCTGTATGCACAAAGTTGAAATGCTTGACGCAAGATATTGTTCAACAGTGCTGCAACCTATACTCTTGGGAAACTGGAAACTTAGGACAGGAGGTTGCATGTGGTGGACCATCTTGCTCTGAAGTTAGGATAGCAGACAATCTATTCTTTGAGGAGCTTAATGGCCATTTTAATGGCAGCAAAGAACCATATGGGAATCTTATGGGCATAATGTTTCACGGATGCCTCAGCACAGCTAGTTTGATTAACAACATTATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGATCTACTCGGAGGTAACTATGGCACGAAAAGATGCAATGAAAGAAGACCAGATTAATGGTGATAAGATGGTCTTATTACGGGCAACTATTTACGAATCTGCTCGTCTTGTGTCAGCCGGGTCTTTGCTACAGAGATGTTCTCTCAAACATGATTTTACTCTTAAGAGCGGTCATACCATACCAGCTGGAGCAGGAGTGGTTGTGCCTGTAGAGCTGGTAATGATGGATGATTCCACTTTGGGAGGCGATGCTAGTGAATTCAATCCATACCGCTTTTTGTCAAAGGCTGGAGAGCGATCTGGGGCTGCTCCGAAGTCTGTGAATCAGGGAGAGAGCTCCTTCACTTTGAATGATCCAAATAAAAGTACAGCATTTCTTCCCTTTGGCTCTGGTATACGTGCCTGCGTTGGGCAGAAATTTGTAACCGAAGGAGTTGCAATGTTGTTCGCGTCATTGCTCAAACAGTATGAGATAAAGCTCCATCCAAAAGCTCAGGATACCTCAAAACCAAATAACTTCGGGTTTGAGCTTCTTTCTAGTTCACATATAGTTTTTGTAGAAAGGAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

357

Amino Acids

39.16

Weight (kDa)

6.46

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 344 1.7e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 669
AccI GTMKAC 1 cut(s) 895
AccII CGCG 1 cut(s) 950
AciI CCGC 2 cut(s) 669, 772
AclWI GGATC 1 cut(s) 848
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 758, 917
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 868
AfiI CCNNNNNNNGG 1 cut(s) 909
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 4 cut(s) 226, 251, 763, 850
AjnI CCWGG 1 cut(s) 42
Alw21I GWGCWC 2 cut(s) 123, 839
AlwI GGATC 1 cut(s) 848
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 4 cut(s) 104, 258, 384, 806
ApoI RAATTY 2 cut(s) 758, 917
AseI ATTAAT 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 96, 314
AsuC2I CCSGG 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 2 cut(s) 96, 314
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 2 cut(s) 123, 839
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 2 cut(s) 123, 839
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 4 cut(s) 116, 245, 396, 793
BccI CCATC 4 cut(s) 325, 562, 718, 990
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 991
BcnI CCSGG 1 cut(s) 619
BfaI CTAG 4 cut(s) 89, 444, 753, 1038
BfmI CTRYAG 2 cut(s) 629, 708
BfrI CTTAAG 1 cut(s) 662
BfuI GTATCC 1 cut(s) 991
BglII AGATCT 1 cut(s) 501
BisI GCNGC 4 cut(s) 105, 259, 385, 807
BlsI GCNGC 4 cut(s) 106, 260, 386, 808
Bme1390I CCNGG 2 cut(s) 44, 619
Bme18I GGWCC 2 cut(s) 96, 314
BmgT120I GGNCC 2 cut(s) 96, 314
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 44, 619
BmsI GCATC 5 cut(s) 70, 419, 490, 523, 739
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 4 cut(s) 54, 86, 625, 657
BpmI CTGGAG 2 cut(s) 708, 810
Bpu10I CCTNAGC 3 cut(s) 138, 434, 993
BpuMI CCSGG 1 cut(s) 619
BsaAI YACGTR 1 cut(s) 899
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 681, 687, 711, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 909
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 3 cut(s) 543, 945, 953
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 4 cut(s) 434, 481, 733, 982
BseLI CCNNNNNNNGG 1 cut(s) 909
BseMI GCAATG 3 cut(s) 543, 945, 953
BseMII CTCAG 2 cut(s) 448, 1007
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 131, 374
BseXI GCAGC 4 cut(s) 116, 245, 396, 793
Bsh1236I CGCG 1 cut(s) 950
BshFI GGCC 1 cut(s) 372
BsiHKAI GWGCWC 2 cut(s) 123, 839
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 909
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 123, 839
Bsp143I GATC 3 cut(s) 501, 797, 853
BspACI CCGC 2 cut(s) 669, 772
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 447, 1006
BspFNI CGCG 1 cut(s) 950
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 848
BspTI CTTAAG 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 669
BsrDI GCAATG 3 cut(s) 543, 945, 953
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 501, 797, 853
BssNAI GTATAC 1 cut(s) 896
BssT1I CCWWGG 1 cut(s) 99
Bst1107I GTATAC 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 3 cut(s) 23, 255, 966
BstAFI CTTAAG 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 4 cut(s) 138, 289, 434, 993
BstF5I GGATG 4 cut(s) 434, 481, 733, 982
BstFNI CGCG 1 cut(s) 950
BstKTI GATC 3 cut(s) 504, 800, 856
BstMBI GATC 3 cut(s) 501, 797, 853
BstMWI GCNNNNNNNGC 3 cut(s) 89, 143, 712
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 42, 617
BstSFI CTRYAG 2 cut(s) 629, 708
BstUI CGCG 1 cut(s) 950
BstV1I GCAGC 4 cut(s) 116, 245, 396, 793
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 501
BstXI CCANNNNNNTGG 2 cut(s) 380, 557
BstYI RGATCY 1 cut(s) 501
BstZ17I GTATAC 1 cut(s) 896
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 4 cut(s) 434, 481, 733, 982
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 904
Cfr13I GGNCC 2 cut(s) 96, 314
CseI GACGC 2 cut(s) 244, 939
Csp6I GTAC 1 cut(s) 867
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 2 cut(s) 306, 650
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 4 cut(s) 138, 289, 434, 993
DpnI GATC 3 cut(s) 503, 799, 855
DpnII GATC 3 cut(s) 501, 797, 853
EaeI YGGCCR 1 cut(s) 370
Ecl136II GAGCTC 2 cut(s) 121, 837
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 123, 839
Eco47I GGWCC 2 cut(s) 96, 314
Eco53kI GAGCTC 2 cut(s) 121, 837
Eco57I CTGAAG 1 cut(s) 348
EcoICRI GAGCTC 2 cut(s) 121, 837
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 2 cut(s) 123, 839
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 309, 653
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 2 cut(s) 305, 649
FauNDI CATATG 1 cut(s) 397
FblI GTMKAC 1 cut(s) 895
Fnu4HI GCNGC 4 cut(s) 105, 259, 385, 807
FokI GGATG 4 cut(s) 441, 468, 740, 969
FriOI GRGCYC 2 cut(s) 123, 839
Fsp4HI GCNGC 4 cut(s) 105, 259, 385, 807
FspBI CTAG 4 cut(s) 89, 444, 753, 1038
GluI GCNGC 4 cut(s) 105, 259, 385, 807
GsuI CTGGAG 2 cut(s) 708, 810
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 618
HgaI GACGC 2 cut(s) 244, 939
Hin1II CATG 2 cut(s) 309, 653
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 4 cut(s) 403, 596, 731, 823
HpaII CCGG 1 cut(s) 618
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 5 cut(s) 19, 112, 314, 896, 1043
Hpy188I TCNGA 3 cut(s) 328, 511, 813
Hpy188III TCNNGA 1 cut(s) 995
Hpy8I GTNNAC 5 cut(s) 19, 112, 314, 896, 1043
HpyAV CCTTC 2 cut(s) 850, 923
HpyCH4III ACNGT 3 cut(s) 23, 255, 966
HpyCH4IV ACGT 1 cut(s) 898
HpyCH4V TGCA 6 cut(s) 83, 216, 261, 305, 536, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 143, 712
HpyF3I CTNAG 4 cut(s) 138, 289, 434, 993
HpySE526I ACGT 1 cut(s) 898
Hsp92II CATG 2 cut(s) 309, 653
Kzo9I GATC 3 cut(s) 501, 797, 853
LmnI GCTCC 8 cut(s) 62, 118, 126, 361, 689, 814, 842, 984
Lsp1109I GCAGC 4 cut(s) 116, 245, 396, 793
LweI GCATC 5 cut(s) 70, 419, 490, 523, 739
MaeI CTAG 4 cut(s) 89, 444, 753, 1038
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 3 cut(s) 169, 514, 922
MalI GATC 3 cut(s) 503, 799, 855
MbiI CCGCTC 1 cut(s) 669
MboI GATC 3 cut(s) 501, 797, 853
MboII GAAGA 2 cut(s) 557, 869
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 123, 839
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 758, 917
MluNI TGGCCA 1 cut(s) 372
MnlI CCTC 8 cut(s) 80, 109, 292, 352, 443, 505, 737, 1012
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 85
MscI TGGCCA 1 cut(s) 372
MseI TTAA 5 cut(s) 366, 378, 453, 555, 663
MslI CAYNNNNRTG 2 cut(s) 378, 464
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 3 cut(s) 107, 686, 1071
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 44, 619
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 950
MwoI GCNNNNNNNGC 3 cut(s) 89, 143, 712
NciI CCSGG 1 cut(s) 619
NdeI CATATG 1 cut(s) 397
NdeII GATC 3 cut(s) 501, 797, 853
NlaIII CATG 2 cut(s) 309, 653
NlaIV GGNNCC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 309
PfeI GAWTC 4 cut(s) 403, 596, 731, 823
PkrI GCNGC 4 cut(s) 106, 260, 386, 808
Ppu21I YACGTR 1 cut(s) 899
PshBI ATTAAT 1 cut(s) 555
Psp124BI GAGCTC 2 cut(s) 123, 839
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 96, 314
PsuI RGATCY 1 cut(s) 501
PvuII CAGCTG 3 cut(s) 107, 686, 1071
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
RseI CAYNNNNRTG 2 cut(s) 378, 464
SacI GAGCTC 2 cut(s) 123, 839
SaqAI TTAA 5 cut(s) 366, 378, 453, 555, 663
SatI GCNGC 4 cut(s) 105, 259, 385, 807
Sau3AI GATC 3 cut(s) 501, 797, 853
Sau96I GGNCC 2 cut(s) 96, 314
ScrFI CCNGG 2 cut(s) 44, 619
SduI GDGCHC 2 cut(s) 123, 839
SfaNI GCATC 5 cut(s) 70, 419, 490, 523, 739
SfcI CTRYAG 2 cut(s) 629, 708
SinI GGWCC 2 cut(s) 96, 314
SmiMI CAYNNNNRTG 2 cut(s) 378, 464
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 2 cut(s) 758, 917
SsiI CCGC 2 cut(s) 669, 772
SspMI CTAG 4 cut(s) 89, 444, 753, 1038
SstI GAGCTC 2 cut(s) 123, 839
StyD4I CCNGG 2 cut(s) 42, 617
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 23, 255, 966
TaiI ACGT 1 cut(s) 901
TasI AATT 2 cut(s) 758, 917
TatI WGTACW 1 cut(s) 866
TfiI GAWTC 4 cut(s) 403, 596, 731, 823
Tru1I TTAA 5 cut(s) 366, 378, 453, 555, 663
Tru9I TTAA 5 cut(s) 366, 378, 453, 555, 663
TscAI CASTG 1 cut(s) 260
TseI GCWGC 4 cut(s) 104, 258, 384, 806
TspDTI ATGAA 2 cut(s) 482, 554
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 96, 314
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 758, 917
XceI RCATGY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 895
XspI CTAG 4 cut(s) 89, 444, 753, 1038
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.