Rh1CG088000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003955
Physical Location & Seq
Forward (+)
18580296 .. 18611330
31035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG088000.1

Sequence Viewer

Length: 696 bp
ATGGATCCAGTCCCCTGCTTTAATGGCCCTGGCTACCAAATCTACTCGGTTTCTTCTTCCCAAAGCATTGAGGATTTGCCCCTCCTGTCTTGTACAAAGATGCGTAATCTTTCACTGGTTCCATACGGCTCGTATGGATATCCAATTTCAAATCTTTATTTGGAATGGTCTGAACCAAATTGTAGACCGTGTGAAGCACATGGCAAAATATGTGGATTGAAGAAGAATGGCACCACACGTACTGAAATTGAATGCCTTCCCAGGAAGAAAGAAGGTTCAAAACCAAAGTTAGTACCCACTGGTGAGTTTTCTAACAGATTTACTCTTAAGAGTGGCCATACCATACCAGCTGGAGCAGGATTGGTTGTGCCTGTAGAGCTGGTAATGATGGATGATTCCACTTTGGGAGGGGATGCTAGTGAATTCAATCCATACCGCTTTTTGTCAAAGGCTGGAGAGGGATCTGGGGCTGCTCAGAAGTCTGTGAATCAGGGAGAGAGCTCCTGCACTTTGAATGATCCAAATAAAAGTACAGCATTTCTTCCCTTTGGCTCTGGTATACGTGCCTGCGTTGGGCAGAAATTTGTAACCGAAGGAGTTGCAATGTTATTCGCATCATTGCTCAAACAGTATGAGATAAAGCTCCATCCAAAAGCTCAGGATACCTCAAAACCAAATAACTTCGGAAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

231

Amino Acids

24.97

Weight (kDa)

8.56

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 112 - 227 8e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 2 cut(s) 184, 559
AciI CCGC 1 cut(s) 436
AclWI GGATC 3 cut(s) 12, 469, 512
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 2 cut(s) 422, 581
AfaI GTAC 4 cut(s) 94, 241, 294, 532
AfiI CCNNNNNNNGG 1 cut(s) 573
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 6 cut(s) 150, 220, 251, 279, 427, 514
AjnI CCWGG 2 cut(s) 28, 260
AluBI AGCT 5 cut(s) 350, 379, 501, 643, 656
AluI AGCT 5 cut(s) 350, 379, 501, 643, 656
Alw21I GWGCWC 1 cut(s) 503
AlwI GGATC 3 cut(s) 12, 469, 512
AoxI GGCC 2 cut(s) 25, 334
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 2 cut(s) 422, 581
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 314
BalI TGGCCA 1 cut(s) 336
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 457
BccI CCATC 2 cut(s) 382, 654
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 2 cut(s) 30, 262
BciVI GTATCC 1 cut(s) 655
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 2 cut(s) 30, 262
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 3 cut(s) 6, 120, 232
BmrFI CCNGG 2 cut(s) 30, 262
BmsI GCATC 3 cut(s) 90, 403, 623
BpmI CTGGAG 2 cut(s) 372, 474
Bpu10I CCTNAGC 1 cut(s) 657
BsaAI YACGTR 2 cut(s) 239, 563
BsaJI CCNNGG 2 cut(s) 28, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 3 cut(s) 8, 120, 304
Bse3DI GCAATG 2 cut(s) 609, 617
BseBI CCWGG 2 cut(s) 30, 262
BseDI CCNNGG 2 cut(s) 28, 260
BseGI GGATG 3 cut(s) 397, 418, 646
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMI GCAATG 2 cut(s) 609, 617
BseMII CTCAG 2 cut(s) 488, 671
BseNI ACTGG 3 cut(s) 8, 120, 304
BseXI GCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 490
BshFI GGCC 2 cut(s) 27, 336
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 573
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 2 cut(s) 27, 336
Bsp1286I GDGCHC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 92
Bsp143I GATC 3 cut(s) 4, 461, 517
BspACI CCGC 1 cut(s) 436
BspANI GGCC 2 cut(s) 27, 336
BspCNI CTCAG 2 cut(s) 487, 670
BspLI GGNNCC 3 cut(s) 6, 120, 232
BspPI GGATC 3 cut(s) 12, 469, 512
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 609, 617
BsrGI TGTACA 1 cut(s) 92
BsrI ACTGG 3 cut(s) 8, 120, 304
BssECI CCNNGG 2 cut(s) 28, 260
BssMI GATC 3 cut(s) 4, 461, 517
BssNAI GTATAC 1 cut(s) 560
Bst1107I GTATAC 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 30, 262
Bst4CI ACNGT 2 cut(s) 189, 630
BstAFI CTTAAG 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 92
BstBAI YACGTR 2 cut(s) 239, 563
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 2 cut(s) 474, 657
BstF5I GGATG 3 cut(s) 397, 418, 646
BstKTI GATC 3 cut(s) 7, 464, 520
BstMBI GATC 3 cut(s) 4, 461, 517
BstMWI GCNNNNNNNGC 2 cut(s) 24, 376
BstNI CCWGG 2 cut(s) 30, 262
BstSCI CCNGG 2 cut(s) 28, 260
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 4, 461
BstYI RGATCY 2 cut(s) 4, 461
BstZ17I GTATAC 1 cut(s) 560
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 2 cut(s) 27, 336
BtsCI GGATG 3 cut(s) 397, 418, 646
BtsIMutI CAGTG 2 cut(s) 113, 297
Cac8I GCNNGC 1 cut(s) 568
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 4 cut(s) 93, 240, 293, 531
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 1 cut(s) 200
CviQI GTAC 4 cut(s) 93, 240, 293, 531
DdeI CTNAG 2 cut(s) 474, 657
DpnI GATC 3 cut(s) 6, 463, 519
DpnII GATC 3 cut(s) 4, 461, 517
EaeI YGGCCR 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 503
Eco32I GATATC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 28, 260
EcoRV GATATC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 503
FaeI CATG 1 cut(s) 203
FaiI YATR 9 cut(s) 124, 135, 201, 211, 339, 344, 433, 560, 633
FatI CATG 1 cut(s) 199
FblI GTMKAC 2 cut(s) 184, 559
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 3 cut(s) 404, 425, 633
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 417
GluI GCNGC 1 cut(s) 471
GsuI CTGGAG 2 cut(s) 372, 474
HaeIII GGCC 2 cut(s) 27, 336
Hin1II CATG 1 cut(s) 203
HinfI GANTC 2 cut(s) 395, 487
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 185, 560
Hpy188I TCNGA 3 cut(s) 172, 477, 686
Hpy188III TCNNGA 1 cut(s) 659
Hpy8I GTNNAC 2 cut(s) 185, 560
HpyAV CCTTC 3 cut(s) 266, 266, 587
HpyCH4III ACNGT 2 cut(s) 189, 630
HpyCH4IV ACGT 2 cut(s) 238, 562
HpyCH4V TGCA 2 cut(s) 507, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 376
HpyF3I CTNAG 2 cut(s) 474, 657
HpySE526I ACGT 2 cut(s) 238, 562
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 3 cut(s) 4, 461, 517
LmnI GCTCC 3 cut(s) 353, 506, 648
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 3 cut(s) 90, 403, 623
MaeI CTAG 1 cut(s) 417
MaeII ACGT 2 cut(s) 238, 562
MaeIII GTNAC 1 cut(s) 586
MalI GATC 3 cut(s) 6, 463, 519
MboI GATC 3 cut(s) 4, 461, 517
MboII GAAGA 6 cut(s) 45, 48, 232, 235, 277, 533
MflI RGATCY 2 cut(s) 4, 461
MhlI GDGCHC 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 5 cut(s) 144, 178, 246, 422, 581
MluNI TGGCCA 1 cut(s) 336
MnlI CCTC 5 cut(s) 64, 92, 401, 451, 676
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 336
MseI TTAA 2 cut(s) 21, 327
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 30, 262
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 30, 262
MwoI GCNNNNNNNGC 2 cut(s) 24, 376
NdeII GATC 3 cut(s) 4, 461, 517
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 6, 120, 232
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 395, 487
PkrI GCNGC 1 cut(s) 472
Ppu21I YACGTR 2 cut(s) 239, 563
Psp124BI GAGCTC 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 28, 260
PspGI CCWGG 2 cut(s) 28, 260
PspN4I GGNNCC 3 cut(s) 6, 120, 232
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 2 cut(s) 4, 461
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 4 cut(s) 94, 241, 294, 532
RsaNI GTAC 4 cut(s) 93, 240, 293, 531
SacI GAGCTC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 21, 327
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 3 cut(s) 4, 461, 517
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 30, 262
SduI GDGCHC 1 cut(s) 503
SetI ASST 9 cut(s) 241, 277, 352, 381, 503, 565, 645, 658, 668
SfaNI GCATC 3 cut(s) 90, 403, 623
SfcI CTRYAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 5 cut(s) 144, 178, 246, 422, 581
SsiI CCGC 1 cut(s) 436
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 28, 260
TaaI ACNGT 2 cut(s) 189, 630
TaiI ACGT 2 cut(s) 241, 565
TasI AATT 5 cut(s) 144, 178, 246, 422, 581
TatI WGTACW 2 cut(s) 92, 530
TfiI GAWTC 2 cut(s) 395, 487
Tru1I TTAA 2 cut(s) 21, 327
Tru9I TTAA 2 cut(s) 21, 327
TscAI CASTG 2 cut(s) 120, 304
TseI GCWGC 1 cut(s) 470
TspRI CASTG 2 cut(s) 120, 304
Vha464I CTTAAG 1 cut(s) 326
XapI RAATTY 2 cut(s) 422, 581
XmiI GTMKAC 2 cut(s) 184, 559
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.