Rh3AG238100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003955
Physical Location & Seq
Reverse (-)
24706064 .. 24708139
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG238100.1

Sequence Viewer

Length: 252 bp
ATGGCTCTGTGGTTGGGACCAACTCAGCTTTTAGTGTCAATAAAGGATCCAACTCTTATCAGAGTCATGCTACTAAAGGCTGCAAATAAGTTGCCTATGATTGGGAGGGCATTCCATTTGGCCTTTGGAAGGTCAAGTCTCTTTGCTTATTCTTTGGATGAGTCTGCTCTTATCGAAGAATCACTTCCTGTGACCAAAATTCCTGGTGATGTGGTTTACTTAGGATCAACATGCAAACAAGGAGAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

83

Amino Acids

9.05

Weight (kDa)

7.89

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 41, 54, 232
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 101, 129
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 3 cut(s) 41, 54, 232
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 17
BamHI GGATCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 18, 48
BmrFI CCNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 129
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 101, 129
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 101, 129
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 46, 224
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 18, 48
BspPI GGATC 3 cut(s) 41, 54, 232
BssMI GATC 2 cut(s) 46, 224
Bst2UI CCWGG 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 24, 220
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 49, 227
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 46, 224
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 17
CviAII CATG 2 cut(s) 67, 231
CviJI RGCY 4 cut(s) 5, 28, 80, 122
CviKI_1 RGCY 4 cut(s) 5, 28, 80, 122
DdeI CTNAG 2 cut(s) 24, 220
DpnI GATC 2 cut(s) 48, 226
DpnII GATC 2 cut(s) 46, 224
Eco47I GGWCC 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 70, 234
FaiI YATR 3 cut(s) 68, 98, 232
FalI AAGNNNNNCTT 3 cut(s) 168, 200, 231
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 66, 230
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 2 cut(s) 70, 234
HinfI GANTC 3 cut(s) 63, 161, 179
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 83, 234
HpyF3I CTNAG 2 cut(s) 24, 220
Hsp92II CATG 2 cut(s) 70, 234
Kzo9I GATC 2 cut(s) 46, 224
LpnPI CCDG 3 cut(s) 189, 201, 216
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 48, 226
MboI GATC 2 cut(s) 46, 224
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 72, 170
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 204
NdeII GATC 2 cut(s) 46, 224
NlaIII CATG 2 cut(s) 70, 234
NlaIV GGNNCC 2 cut(s) 18, 48
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 234
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 71, 169
PpsI GAGTC 2 cut(s) 71, 169
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 18, 48
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 46
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 46, 224
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 72, 170
ScrFI CCNGG 1 cut(s) 204
SetI ASST 2 cut(s) 30, 134
SgeI CNNG 6 cut(s) 79, 147, 200, 215, 216, 243
SinI GGWCC 1 cut(s) 17
Sse9I AATT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 202
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 127
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.