Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003955

Physical Location & Seq

Genomic Coordinates Forward (+)

64678828 .. 64686645

Gene Structure 7818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCCCTGGAAAGAGCAATACAAACTGAGGTGTTGGCTGATTTGCACAAGAAATATGGCTCTGTTGTGAAGTTGTGGTTGGGACCAACTCAGCTTTTAGTGTCAATAAAGGATCCAACTCTTATCAGAGACATGCTACTAAAGGCTGCAAATAATTTGCCTAAGACTGGGAGGGCATTCCATTTGGCCTCTGGAAGGTCAAGCCTTTGGAGCTGTCAGCTCCATCGAGTATTGGCTGATATTTTGTACACTTGTTCCTTTCTCTTCTCCCAGGCTATGGATTCATTTGAGCCCTATAGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAAACAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCCACCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

7.01

Isoelectric Point (pI)

16.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003955)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131 FvH4_7g04131
malus_domestica	MD02G1275100.v1.1
prunus_persica	Prupe.2G045900_v2.0.a1 Prupe.2G045900_v2.0.a1
pyrus_communis	pycom02g23520
rosa_chinensis	RchiOBHm_Chr1g0328201 RchiOBHm_Chr5g0059421
rosa_laevigata	RLG00000029936
rosa_multiflora	Rmu_sc0002809.1_g000001 Rmu_sc0004646.1_g000039 Rmu_sc0026230.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091240 Rroxscaffold_4G00321720 Rroxscaffold_6G00398480
rosa_rugosa	Rorug01G0074200
rosa_samantha	Rh1AG091600 Rh1BG073600 Rh1BG073900 Rh1CG087800 Rh1CG088000 Rh1DG094900 Rh1DG095000 Rh2BG406200 Rh3AG238100 Rh4DG195500 Rh5BG398600 Rh5DG413900 Rh6AG099200
rosa_wichuraiana	Rw0G011020 Rw1G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AclWI	GGATC	3 cut(s)	107, 120, 322
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	167, 195, 277
AjnI	CCWGG	2 cut(s)	6, 270
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	94, 213, 220
AluI	AGCT	3 cut(s)	94, 213, 220
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	107, 120, 322
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	231, 368
BciT130I	CCWGG	2 cut(s)	8, 272
BcoDI	GTCTC	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	295
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	8, 272
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	84, 114
BmrFI	CCNGG	2 cut(s)	8, 272
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	6, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 195, 277
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	2 cut(s)	395, 421
BseBI	CCWGG	2 cut(s)	8, 272
BseDI	CCNNGG	2 cut(s)	6, 270
BseLI	CCNNNNNNNGG	3 cut(s)	167, 195, 277
BseMI	GCAATG	2 cut(s)	395, 421
BseMII	CTCAG	2 cut(s)	18, 104
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	167, 195, 277
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	294, 432
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	112, 314
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	19, 103
BspLI	GGNNCC	2 cut(s)	84, 114
BspPI	GGATC	3 cut(s)	107, 120, 322
BsrDI	GCAATG	2 cut(s)	395, 421
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	6, 270
BssMI	GATC	2 cut(s)	112, 314
Bst2UI	CCWGG	2 cut(s)	8, 272
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	2 cut(s)	392, 397
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	393, 428
BstDEI	CTNAG	3 cut(s)	27, 90, 162
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	115, 317
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	112, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 392, 397
BstNI	CCWGG	2 cut(s)	8, 272
BstNSI	RCATGY	2 cut(s)	136, 395
BstSCI	CCNGG	2 cut(s)	6, 270
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	393, 428
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	133, 392
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	27, 90, 162
DpnI	GATC	2 cut(s)	114, 316
DpnII	GATC	2 cut(s)	112, 314
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	83
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	6, 270
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	136, 395
FaiI	YATR	5 cut(s)	57, 134, 278, 297, 393
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	132, 391
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	136, 395
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	46, 149, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 392, 397
HpyF3I	CTNAG	3 cut(s)	27, 90, 162
Hsp92II	CATG	2 cut(s)	136, 395
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	112, 314
LmnI	GCTCC	2 cut(s)	210, 225
LpnPI	CCDG	7 cut(s)	20, 153, 177, 257, 284, 352, 422
Lsp1109I	GCAGC	1 cut(s)	133
MalI	GATC	2 cut(s)	114, 316
MboI	GATC	2 cut(s)	112, 314
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	294, 432
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	3 cut(s)	22, 165, 199
Mph1103I	ATGCAT	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	8, 272
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	8, 272
MwoI	GCNNNNNNNGC	3 cut(s)	210, 392, 397
NdeII	GATC	2 cut(s)	112, 314
NlaIII	CATG	2 cut(s)	136, 395
NlaIV	GGNNCC	2 cut(s)	84, 114
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	2 cut(s)	136, 395
PaeI	GCATGC	1 cut(s)	395
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	6, 270
PspGI	CCWGG	2 cut(s)	6, 270
PspN4I	GGNNCC	2 cut(s)	84, 114
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	112, 314
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	8, 272
SduI	GDGCHC	2 cut(s)	294, 432
SetI	ASST	5 cut(s)	33, 96, 200, 215, 222
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	6, 270
TaqI	TCGA	1 cut(s)	226
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	193
XceI	RCATGY	2 cut(s)	136, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.