Rh1CG087800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003955
Physical Location & Seq
Forward (+)
18534758 .. 18541236
6479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG087800.1

Sequence Viewer

Length: 1512 bp
ATGAAACCCTCCACCTCCTCTTCTTCTTCTTCTTCGCCATGCGGATCAAACACGCTCTTAACGATTCTGTTCCAGTCGAGATCCGAAGCCTGCAGCAACGATTCTATTCTCAGAGACTTGGCCGCCAGAGAATTCAACGCCTTCCTCTGGATCTCTCTCATCGCCGTCACCGCTCTGTTGCTCCGGAAGCTCTTCGACCTGCTTCGCTTATGGGCCAAAGCCAAGCCCATCCCTGGGCCTCCTTGCCCCTCTTTCTACGGCCACTCCAACCTCCTTTCCCGCCAAAATATTACTGAGGTGTTGGGTGATTTGCACAAGAAATATGGCTCTGTTGTGAAGCTGTGGTTGGGACCGACTCGGCTTTTAGTGTCAATAAAGGATCCAATTCTTATCAAAGAGATGCTACTAAAGGCTGCAGATAAGTTACCTATGACTGGGAGGGCATTCCATTTGGCCTTTGGAAGGTCGAGTCTCTTTGCTTCTTCTTTCGACGAGGTGCAAAAGAGAAGGGAAACATTGTTAACAGAATTAAATGGAAAAGTTCGTGAGAACAAAAATGTGTTCCCCACCAAGGCTGTGGACTGTGTCTTGGAGAGGATAAACAATGTAATGGGTAAAGATAGTGTTGACAGTAGAGTATTTTCTCAACACATGGCTTTTACCATGTTAGGAGCCACCCTCTTTGGAGATGCATTTTTAGCTTGGTCTAAGGCAGCTGTTTATGAGGAGCTCCTTATGATGATTGCTAAGGATGCTGGTTTTTGGGCTTCTTATTGTGTTACTCCCTTTTGGAAGCCTGGATTTTGGAAATATCAGTCTGTATGCACAAAGTTGAAATGCTTAACGCAAGATATTGTTCAACAATGCTGCAACCTATACTCTTGGGAAACTGGAAACTTAGGAAAGGAGGTTGCATGCGGTGGACCATCTTGCTCTGAAGTTAGGATAGTAGACAATCTATTCTTTGAGGAGCTTAATGGCCATTTTAATGTTAGTGAGGAACCATATGGGAATCTTATGGGCATAATGTTTCACGGATGCCTCAGCACAGCTAGTTTGATTAATAACATTATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGATCTACTCGGAGGTAACTATGGCACAAAAAGATGCAATGAAGGAAGACCAGATTAGTGCTGATAAGTTGGTCTTATTACTGGCAACTATTTACGAATCTGCTCGTCTTGTGTCAGCCGGGTCTTTGCTACAGAGATGTTCTCTCAAACAGGATTTTTCGCTTAAGAGTGGTCATACCATACCAGCTGGAGCAGGATTGGTTGTGCCTGTAGAGCTGGTAATGATGGATGATTCCACTTTGGGAGGCGATGCTAGTGAATTCAATCCATACCGCTTTTTGTCGAAGGCTGGAGAGGGATCTGATATATTTCTAAGAAAATCATTTTCAGGTTTCATTTCCTACTTATTCTACTGCCAACTAAGTTTATTTAGTTTGCTATCTCCTTACTCTGCAAATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

503

Amino Acids

55.77

Weight (kDa)

8.11

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 79 - 473 1.2e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 951
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 6 cut(s) 42, 123, 171, 280, 918, 1381
AclWI GGATC 6 cut(s) 52, 75, 158, 374, 387, 1414
AcoI YGGCCR 3 cut(s) 120, 259, 979
AcsI RAATTY 2 cut(s) 131, 1367
AcuI CTGAAG 1 cut(s) 957
AfiI CCNNNNNNNGG 6 cut(s) 147, 233, 234, 434, 462, 571
AflII CTTAAG 1 cut(s) 1271
AgsI TTSAA 4 cut(s) 136, 835, 860, 1372
AjnI CCWGG 2 cut(s) 232, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 9 cut(s) 190, 340, 701, 716, 730, 973, 1052, 1295, 1324
AluI AGCT 9 cut(s) 190, 340, 701, 716, 730, 973, 1052, 1295, 1324
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 2 cut(s) 108, 476
AlwI GGATC 6 cut(s) 52, 75, 158, 374, 387, 1414
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 6 cut(s) 120, 213, 236, 259, 453, 979
ApeKI GCWGC 4 cut(s) 93, 413, 713, 867
ApoI RAATTY 2 cut(s) 131, 1367
AseI ATTAAT 1 cut(s) 1062
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 4 cut(s) 213, 236, 350, 923
AsuC2I CCSGG 1 cut(s) 1228
AsuHPI GGTGA 2 cut(s) 160, 317
AvaII GGWCC 2 cut(s) 350, 923
BalI TGGCCA 1 cut(s) 981
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 1161
Bbv12I GWGCWC 1 cut(s) 732
BbvCI CCTCAGC 1 cut(s) 1043
BbvI GCAGC 4 cut(s) 105, 400, 725, 854
BccI CCATC 3 cut(s) 236, 934, 1327
BceAI ACGGC 2 cut(s) 149, 274
BciT130I CCWGG 2 cut(s) 234, 798
BcnI CCSGG 1 cut(s) 1228
BcoDI GTCTC 2 cut(s) 108, 476
BfaI CTAG 2 cut(s) 1053, 1362
BfmI CTRYAG 5 cut(s) 91, 414, 1238, 1317, 1508
BfrI CTTAAG 1 cut(s) 1271
BfuAI ACCTGC 1 cut(s) 207
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 5 cut(s) 94, 123, 414, 714, 868
BlsI GCNGC 5 cut(s) 95, 124, 415, 715, 869
Bme1390I CCNGG 3 cut(s) 234, 798, 1228
Bme18I GGWCC 2 cut(s) 350, 923
BmgT120I GGNCC 4 cut(s) 213, 236, 350, 923
BmiI GGNNCC 4 cut(s) 351, 381, 673, 1002
BmrFI CCNGG 3 cut(s) 234, 798, 1228
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 7 cut(s) 390, 679, 742, 1028, 1099, 1132, 1348
BmuI ACTGGG 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 1161
BplI GAGNNNNNCTC 4 cut(s) 663, 695, 1234, 1266
BpmI CTGGAG 2 cut(s) 1317, 1419
Bpu10I CCTNAGC 2 cut(s) 747, 1043
BpuMI CCSGG 1 cut(s) 1228
BsaJI CCNNGG 3 cut(s) 232, 233, 570
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 147, 233, 234, 434, 462, 571
Bse1I ACTGG 4 cut(s) 73, 439, 895, 1194
Bse3DI GCAATG 1 cut(s) 1152
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 2 cut(s) 234, 798
BseDI CCNNGG 3 cut(s) 232, 233, 570
BseGI GGATG 5 cut(s) 228, 757, 1043, 1090, 1342
BseLI CCNNNNNNNGG 6 cut(s) 147, 233, 234, 434, 462, 571
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 3 cut(s) 124, 285, 1057
BseNI ACTGG 4 cut(s) 73, 439, 895, 1194
BseRI GAGGAG 3 cut(s) 7, 740, 983
BseXI GCAGC 4 cut(s) 105, 400, 725, 854
BshFI GGCC 6 cut(s) 122, 215, 238, 261, 455, 981
BsiHKAI GWGCWC 1 cut(s) 732
BsiSI CCGG 2 cut(s) 184, 1227
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 6 cut(s) 147, 233, 234, 434, 462, 571
BsmAI GTCTC 2 cut(s) 108, 476
BsmFI GGGAC 1 cut(s) 363
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 6 cut(s) 122, 215, 238, 261, 455, 981
Bsp1286I GDGCHC 1 cut(s) 732
Bsp13I TCCGGA 1 cut(s) 183
Bsp143I GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
BspACI CCGC 6 cut(s) 42, 123, 171, 280, 918, 1381
BspANI GGCC 6 cut(s) 122, 215, 238, 261, 455, 981
BspCNI CTCAG 3 cut(s) 123, 286, 1056
BspEI TCCGGA 1 cut(s) 183
BspLI GGNNCC 4 cut(s) 351, 381, 673, 1002
BspMAI CTGCAG 2 cut(s) 95, 418
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 6 cut(s) 52, 75, 158, 374, 387, 1414
BspQI GCTCTTC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 1271
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 1152
BsrI ACTGG 4 cut(s) 73, 439, 895, 1194
BssECI CCNNGG 3 cut(s) 232, 233, 570
BssMI GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 234, 798
Bst4CI ACNGT 2 cut(s) 584, 632
Bst6I CTCTTC 2 cut(s) 25, 197
BstAFI CTTAAG 1 cut(s) 1271
BstC8I GCNNGC 2 cut(s) 91, 916
BstDEI CTNAG 8 cut(s) 110, 294, 708, 747, 898, 1043, 1421, 1469
BstENI CCTNNNNNAGG 1 cut(s) 460
BstF5I GGATG 5 cut(s) 228, 757, 1043, 1090, 1342
BstKTI GATC 6 cut(s) 47, 83, 153, 382, 1113, 1409
BstMAI GTCTC 2 cut(s) 108, 476
BstMBI GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
BstMWI GCNNNNNNNGC 5 cut(s) 170, 187, 698, 752, 1321
BstNI CCWGG 2 cut(s) 234, 798
BstNSI RCATGY 1 cut(s) 918
BstSCI CCNGG 3 cut(s) 232, 796, 1226
BstSFI CTRYAG 5 cut(s) 91, 414, 1238, 1317, 1508
BstV1I GCAGC 4 cut(s) 105, 400, 725, 854
BstV2I GAAGAC 1 cut(s) 1161
BstX2I RGATCY 5 cut(s) 80, 150, 379, 1110, 1406
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 5 cut(s) 80, 150, 379, 1110, 1406
BsuRI GGCC 6 cut(s) 122, 215, 238, 261, 455, 981
BtgZI GCGATG 2 cut(s) 145, 1371
BtsCI GGATG 5 cut(s) 228, 757, 1043, 1090, 1342
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 91, 916
Cfr13I GGNCC 4 cut(s) 213, 236, 350, 923
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 4 cut(s) 39, 652, 664, 915
DdeI CTNAG 8 cut(s) 110, 294, 708, 747, 898, 1043, 1421, 1469
DpnI GATC 6 cut(s) 46, 82, 152, 381, 1112, 1408
DpnII GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
EaeI YGGCCR 3 cut(s) 120, 259, 979
Eam1104I CTCTTC 2 cut(s) 25, 197
EarI CTCTTC 2 cut(s) 25, 197
Ecl136II GAGCTC 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 350, 923
Eco53kI GAGCTC 1 cut(s) 730
Eco57I CTGAAG 1 cut(s) 957
EcoICRI GAGCTC 1 cut(s) 730
EcoNI CCTNNNNNAGG 1 cut(s) 460
EcoRI GAATTC 2 cut(s) 131, 1367
EcoRII CCWGG 2 cut(s) 232, 796
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 4 cut(s) 42, 655, 667, 918
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 1 cut(s) 363
FatI CATG 4 cut(s) 38, 651, 663, 914
FauI CCCGC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 5 cut(s) 94, 123, 414, 714, 868
FokI GGATG 5 cut(s) 215, 764, 1050, 1077, 1349
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 5 cut(s) 94, 123, 414, 714, 868
FspBI CTAG 2 cut(s) 1053, 1362
GluI GCNGC 5 cut(s) 94, 123, 414, 714, 868
GsuI CTGGAG 2 cut(s) 1317, 1419
HaeIII GGCC 6 cut(s) 122, 215, 238, 261, 455, 981
HapII CCGG 2 cut(s) 184, 1227
Hin1II CATG 4 cut(s) 42, 655, 667, 918
HincII GTYRAC 2 cut(s) 522, 628
HindII GTYRAC 2 cut(s) 522, 628
HinfI GANTC 7 cut(s) 64, 101, 355, 469, 1012, 1205, 1340
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 2 cut(s) 184, 1227
HphI GGTGA 2 cut(s) 160, 317
Hpy166II GTNNAC 5 cut(s) 522, 580, 628, 923, 952
Hpy188I TCNGA 5 cut(s) 85, 113, 937, 1120, 1411
Hpy188III TCNNGA 4 cut(s) 78, 148, 184, 545
Hpy8I GTNNAC 5 cut(s) 522, 580, 628, 923, 952
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 5 cut(s) 151, 456, 501, 1144, 1387
HpyCH4III ACNGT 2 cut(s) 584, 632
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 187, 698, 752, 1321
HpyF3I CTNAG 8 cut(s) 110, 294, 708, 747, 898, 1043, 1421, 1469
Hsp92II CATG 4 cut(s) 42, 655, 667, 918
Kpn2I TCCGGA 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 6 cut(s) 186, 671, 727, 735, 970, 1298
Lsp1109I GCAGC 4 cut(s) 105, 400, 725, 854
LweI GCATC 7 cut(s) 390, 679, 742, 1028, 1099, 1132, 1348
MaeI CTAG 2 cut(s) 1053, 1362
MaeIII GTNAC 4 cut(s) 166, 423, 778, 1123
MalI GATC 6 cut(s) 46, 82, 152, 381, 1112, 1408
MbiI CCGCTC 1 cut(s) 173
MboI GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
MboII GAAGA 8 cut(s) 12, 15, 18, 21, 24, 184, 474, 1166
MflI RGATCY 5 cut(s) 80, 150, 379, 1110, 1406
MhlI GDGCHC 1 cut(s) 732
MlsI TGGCCA 1 cut(s) 981
MluCI AATT 4 cut(s) 131, 384, 527, 1367
MluNI TGGCCA 1 cut(s) 981
MlyI GAGTC 2 cut(s) 349, 478
MmeI TCCRAC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 981
Mph1103I ATGCAT 1 cut(s) 694
MroI TCCGGA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 981
MseI TTAA 8 cut(s) 59, 521, 530, 842, 975, 987, 1062, 1272
MslI CAYNNNNRTG 2 cut(s) 987, 1073
Msp20I TGGCCA 1 cut(s) 981
MspA1I CMGCKG 2 cut(s) 716, 1295
MspCI CTTAAG 1 cut(s) 1271
MspI CCGG 2 cut(s) 184, 1227
MspR9I CCNGG 3 cut(s) 234, 798, 1228
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 2 cut(s) 234, 798
MwoI GCNNNNNNNGC 5 cut(s) 170, 187, 698, 752, 1321
NciI CCSGG 1 cut(s) 1228
NdeI CATATG 1 cut(s) 1006
NdeII GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
NlaIII CATG 4 cut(s) 42, 655, 667, 918
NlaIV GGNNCC 4 cut(s) 351, 381, 673, 1002
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 918
PaeI GCATGC 1 cut(s) 918
PasI CCCWGGG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 5 cut(s) 64, 101, 1012, 1205, 1340
PflFI GACNNNGTC 1 cut(s) 584
PkrI GCNGC 5 cut(s) 95, 124, 415, 715, 869
PleI GAGTC 2 cut(s) 349, 477
PpsI GAGTC 2 cut(s) 349, 477
PshBI ATTAAT 1 cut(s) 1062
Psp124BI GAGCTC 1 cut(s) 732
Psp6I CCWGG 2 cut(s) 232, 796
PspGI CCWGG 2 cut(s) 232, 796
PspN4I GGNNCC 4 cut(s) 351, 381, 673, 1002
PspPI GGNCC 4 cut(s) 213, 236, 350, 923
PstI CTGCAG 2 cut(s) 95, 418
PsuI RGATCY 5 cut(s) 80, 150, 379, 1110, 1406
PsyI GACNNNGTC 1 cut(s) 584
PvuII CAGCTG 2 cut(s) 716, 1295
RseI CAYNNNNRTG 2 cut(s) 987, 1073
SacI GAGCTC 1 cut(s) 732
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 8 cut(s) 59, 521, 530, 842, 975, 987, 1062, 1272
SatI GCNGC 5 cut(s) 94, 123, 414, 714, 868
Sau3AI GATC 6 cut(s) 44, 80, 150, 379, 1110, 1406
Sau96I GGNCC 4 cut(s) 213, 236, 350, 923
SchI GAGTC 2 cut(s) 349, 478
ScrFI CCNGG 3 cut(s) 234, 798, 1228
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 7 cut(s) 390, 679, 742, 1028, 1099, 1132, 1348
SfcI CTRYAG 5 cut(s) 91, 414, 1238, 1317, 1508
SinI GGWCC 2 cut(s) 350, 923
SmiMI CAYNNNNRTG 2 cut(s) 987, 1073
SmlI CTYRAG 1 cut(s) 1271
SmoI CTYRAG 1 cut(s) 1271
SphI GCATGC 1 cut(s) 918
Sse9I AATT 4 cut(s) 131, 384, 527, 1367
SsiI CCGC 6 cut(s) 42, 123, 171, 280, 918, 1381
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 1053, 1362
SstI GAGCTC 1 cut(s) 732
StyD4I CCNGG 3 cut(s) 232, 796, 1226
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 584, 632
TaqI TCGA 5 cut(s) 77, 195, 467, 489, 1391
TaqII GACCGA 1 cut(s) 367
TasI AATT 4 cut(s) 131, 384, 527, 1367
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 5 cut(s) 64, 101, 1012, 1205, 1340
Tru1I TTAA 8 cut(s) 59, 521, 530, 842, 975, 987, 1062, 1272
Tru9I TTAA 8 cut(s) 59, 521, 530, 842, 975, 987, 1062, 1272
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 4 cut(s) 93, 413, 713, 867
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 17, 1091, 1163, 1432
TspGWI ACGGA 1 cut(s) 1050
Tth111I GACNNNGTC 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 1271
VpaK11BI GGWCC 2 cut(s) 350, 923
VspI ATTAAT 1 cut(s) 1062
XagI CCTNNNNNAGG 1 cut(s) 460
XapI RAATTY 2 cut(s) 131, 1367
XceI RCATGY 1 cut(s) 918
XcmI CCANNNNNNNNNTGG 2 cut(s) 455, 574
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 1053, 1362
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.