Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

7765344 .. 7770140

Gene Structure 4797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAGGTGGAAAAGACAACAATAATGGTACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACATGCCACGGCCTGGATCGCATTCTCATCAAGGACACGTATATCCCCCACAAGCATATGCACCACCTGGGTACCCTCCTTCAGGTGGGTATCCTCCTTCTACCGGGTATCCTCCCTCAGCCGGGTATCCTCCCCCAGCCGGGTACCCTCCCTCAGGTGGTTACCCTCCTCAAAGCGGCTACCCTCCTCAAAGCGGGTATCCCCCATCTGGAAATTCTCCTACTATGGCATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCTGGTTATCCAGGCCCATCAGCTCCACATCAATCAGGGCATGGATCTGGTATGGGAATGGGAACTATGTTAGCCGGTGGTGCTGCTGCTGCCGCTGCAGGTTATGGAGTTCACCATCTTGCGCACAGTAGTGGCCATGGAAGAGGTTCCCATGGCTTTGGTTTTGGGGGTTCCCATGGCTACAAACATGGAAAATTTGGAAAGCATCATGGGGGGAAGTTCAAGCATGGGAAATTTGGAAAGCATCATGGGGGAAAGTTCAAGCATGGGAAATTCAAAAAGCATCATGGGGGACTGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

22.37

Weight (kDa)

10.0

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	440
Acc65I	GGTACC	2 cut(s)	150, 222
AccB1I	GGYRCC	2 cut(s)	150, 222
AccB7I	CCANNNNNTGG	2 cut(s)	92, 353
AciI	CCGC	3 cut(s)	255, 273, 444
AclWI	GGATC	2 cut(s)	103, 403
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	4 cut(s)	292, 545, 584, 623
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	3 cut(s)	31, 152, 224
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	574, 613, 628, 652
AjnI	CCWGG	3 cut(s)	91, 145, 361
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	353, 374
AluI	AGCT	2 cut(s)	353, 374
AlwI	GGATC	2 cut(s)	103, 403
AoxI	GGCC	3 cut(s)	89, 364, 484
ApeKI	GCWGC	5 cut(s)	71, 434, 437, 440, 446
ApoI	RAATTY	4 cut(s)	292, 545, 584, 623
Asp700I	GAANNNNTTC	1 cut(s)	496
Asp718I	GGTACC	2 cut(s)	150, 222
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	3 cut(s)	184, 202, 220
AsuHPI	GGTGA	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BalI	TGGCCA	1 cut(s)	486
BanI	GGYRCC	2 cut(s)	150, 222
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	58, 421, 424, 427, 433
BccI	CCATC	3 cut(s)	292, 376, 474
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	3 cut(s)	93, 147, 363
BciVI	GTATCC	4 cut(s)	180, 198, 216, 288
BcnI	CCSGG	3 cut(s)	184, 202, 220
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	4 cut(s)	180, 198, 216, 288
BisI	GCNGC	7 cut(s)	72, 256, 435, 438, 441, 444, 447
BlsI	GCNGC	7 cut(s)	73, 257, 436, 439, 442, 445, 448
Bme1390I	CCNGG	6 cut(s)	93, 147, 184, 202, 220, 363
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	4 cut(s)	152, 224, 499, 523
BmrFI	CCNGG	6 cut(s)	93, 147, 184, 202, 220, 363
BmsI	GCATC	3 cut(s)	565, 604, 643
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	184, 202, 220
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	5 cut(s)	86, 146, 487, 502, 526
Bse118I	RCCGGY	2 cut(s)	320, 425
Bse21I	CCTNAGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	93, 147, 363
BseDI	CCNNGG	5 cut(s)	86, 146, 487, 502, 526
BseMII	CTCAG	2 cut(s)	210, 246
BseRI	GAGGAG	2 cut(s)	237, 255
BseXI	GCAGC	5 cut(s)	58, 421, 424, 427, 433
BseYI	CCCAGC	1 cut(s)	214
BshFI	GGCC	3 cut(s)	91, 366, 486
BshNI	GGYRCC	2 cut(s)	150, 222
BsiSI	CCGG	5 cut(s)	183, 201, 219, 321, 426
BslFI	GGGAC	1 cut(s)	657
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	91, 366, 486
Bsp143I	GATC	2 cut(s)	95, 395
Bsp19I	CCATGG	3 cut(s)	487, 502, 526
BspACI	CCGC	3 cut(s)	255, 273, 444
BspANI	GGCC	3 cut(s)	91, 366, 486
BspCNI	CTCAG	2 cut(s)	209, 245
BspLI	GGNNCC	4 cut(s)	152, 224, 499, 523
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	103, 403
BspT107I	GGYRCC	2 cut(s)	150, 222
BsrFI	RCCGGY	2 cut(s)	320, 425
BssAI	RCCGGY	2 cut(s)	320, 425
BssECI	CCNNGG	5 cut(s)	86, 146, 487, 502, 526
BssMI	GATC	2 cut(s)	95, 395
BssT1I	CCWWGG	3 cut(s)	487, 502, 526
Bst2UI	CCWGG	3 cut(s)	93, 147, 363
Bst4CI	ACNGT	2 cut(s)	479, 648
Bst6I	CTCTTC	1 cut(s)	487
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	196, 232
BstDSI	CCRYGG	4 cut(s)	86, 487, 502, 526
BstEII	GGTNACC	1 cut(s)	239
BstENI	CCTNNNNNAGG	2 cut(s)	159, 231
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	98, 398
BstMBI	GATC	2 cut(s)	95, 395
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 97, 431, 440, 443, 446
BstNI	CCWGG	3 cut(s)	93, 147, 363
BstNSI	RCATGY	1 cut(s)	85
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	6 cut(s)	91, 145, 182, 200, 218, 361
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	5 cut(s)	58, 421, 424, 427, 433
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	395
Bsu36I	CCTNAGG	1 cut(s)	232
BsuI	GTATCC	4 cut(s)	180, 198, 216, 288
BsuRI	GGCC	3 cut(s)	91, 366, 486
BtgI	CCRYGG	4 cut(s)	86, 487, 502, 526
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	2 cut(s)	320, 425
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	30, 151, 223
CviQI	GTAC	3 cut(s)	30, 151, 223
DdeI	CTNAG	2 cut(s)	196, 232
DpnI	GATC	2 cut(s)	97, 397
DpnII	GATC	2 cut(s)	95, 395
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	3 cut(s)	487, 502, 526
Eco32I	GATATC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	239
EcoNI	CCTNNNNNAGG	2 cut(s)	159, 231
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	91, 145, 361
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	3 cut(s)	487, 502, 526
ErhI	CCWWGG	3 cut(s)	487, 502, 526
FaqI	GGGAC	1 cut(s)	657
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	72, 256, 435, 438, 441, 444, 447
Fsp4HI	GCNGC	7 cut(s)	72, 256, 435, 438, 441, 444, 447
FspBI	CTAG	1 cut(s)	336
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	7 cut(s)	72, 256, 435, 438, 441, 444, 447
GsaI	CCCAGC	1 cut(s)	218
HaeIII	GGCC	3 cut(s)	91, 366, 486
HapII	CCGG	5 cut(s)	183, 201, 219, 321, 426
HhaI	GCGC	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HpaII	CCGG	5 cut(s)	183, 201, 219, 321, 426
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188III	TCNNGA	2 cut(s)	288, 652
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	168, 186
HpyCH4III	ACNGT	2 cut(s)	479, 648
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	140, 449
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 97, 431, 440, 443, 446
HpyF3I	CTNAG	2 cut(s)	196, 232
HpySE526I	ACGT	1 cut(s)	117
HspAI	GCGC	1 cut(s)	473
KpnI	GGTACC	2 cut(s)	154, 226
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	95, 395
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	5 cut(s)	58, 421, 424, 427, 433
LweI	GCATC	3 cut(s)	565, 604, 643
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	97, 397
MboI	GATC	2 cut(s)	95, 395
MboII	GAAGA	1 cut(s)	504
MflI	RGATCY	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	4 cut(s)	292, 545, 584, 623
MluNI	TGGCCA	1 cut(s)	486
Mox20I	TGGCCA	1 cut(s)	486
MroNI	GCCGGC	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	486
MspA1I	CMGCKG	2 cut(s)	353, 446
MspI	CCGG	5 cut(s)	183, 201, 219, 321, 426
MspR9I	CCNGG	6 cut(s)	93, 147, 184, 202, 220, 363
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	3 cut(s)	93, 147, 363
MwoI	GCNNNNNNNGC	6 cut(s)	68, 97, 431, 440, 443, 446
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	3 cut(s)	184, 202, 220
NcoI	CCATGG	3 cut(s)	487, 502, 526
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	95, 395
NgoMIV	GCCGGC	1 cut(s)	320
NlaIV	GGNNCC	4 cut(s)	152, 224, 499, 523
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	480
PctI	GAATGC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	496
PflMI	CCANNNNNTGG	2 cut(s)	92, 353
PkrI	GCNGC	7 cut(s)	73, 257, 436, 439, 442, 445, 448
Ppu21I	YACGTR	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	91, 145, 361
PspEI	GGTNACC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	3 cut(s)	91, 145, 361
PspN4I	GGNNCC	4 cut(s)	152, 224, 499, 523
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	31, 152, 224
RsaNI	GTAC	3 cut(s)	30, 151, 223
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	7 cut(s)	72, 256, 435, 438, 441, 444, 447
Sau3AI	GATC	2 cut(s)	95, 395
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	6 cut(s)	93, 147, 184, 202, 220, 363
SetI	ASST	9 cut(s)	10, 120, 148, 166, 238, 355, 376, 454, 499
SfaNI	GCATC	3 cut(s)	565, 604, 643
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	292, 545, 584, 623
SsiI	CCGC	3 cut(s)	255, 273, 444
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	6 cut(s)	91, 145, 182, 200, 218, 361
StyI	CCWWGG	3 cut(s)	487, 502, 526
TaaI	ACNGT	2 cut(s)	479, 648
TaiI	ACGT	1 cut(s)	120
TasI	AATT	4 cut(s)	292, 545, 584, 623
TauI	GCSGC	2 cut(s)	258, 446
TseI	GCWGC	5 cut(s)	71, 434, 437, 440, 446
Van91I	CCANNNNNTGG	2 cut(s)	92, 353
XagI	CCTNNNNNAGG	2 cut(s)	159, 231
XapI	RAATTY	4 cut(s)	292, 545, 584, 623
XceI	RCATGY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.