Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

33044622 .. 33045856

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAGGTGGAAAAGACAATAATAATGATACTACTGACAGAGGGCTATTCTCAAGTCTTGCTGGATTTGCTGCTGGACACATGCCGCGCCCTGGATCACATTCTCATCAAGGACACGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGCGGATACCCTCCTTCAGATGGGTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCCCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCCGGCTATCCTGCCCCTAGCGGATATCCACCAGCCGGCTATCCTGCCCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGGCATGGATCTGGTATGGGAATGGGAACTATGTTAGCCGGTGGTGCTGCTGCAGCCGCTGCAGGTTATGGGGTTCACCATCTTGTGCATGGTAGTAGTCATGGAAGAGGTTCCCATGGCTTTGGTTTTGGGGGTCACCATGGCTTCGGTCATGGGAAATTTGGAAAGCATCATGGGGGGAAGTTCAAGCATGGGAAATTTGGAAAGCGTCATGGGGGAAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

21.87

Weight (kDa)

9.72

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
Acc65I	GGTACC	2 cut(s)	150, 222
AccB1I	GGYRCC	2 cut(s)	150, 222
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	86, 165, 201, 336, 369, 474
AclWI	GGATC	2 cut(s)	103, 433
AcsI	RAATTY	2 cut(s)	575, 614
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	152, 224
AgsI	TTSAA	2 cut(s)	604, 643
AjnI	CCWGG	3 cut(s)	91, 145, 391
AluBI	AGCT	2 cut(s)	383, 404
AluI	AGCT	2 cut(s)	383, 404
AlwI	GGATC	2 cut(s)	103, 433
AlwNI	CAGNNNCTG	1 cut(s)	476
ApeKI	GCWGC	5 cut(s)	71, 464, 467, 470, 476
ApoI	RAATTY	2 cut(s)	575, 614
Asp700I	GAANNNNTTC	1 cut(s)	526
Asp718I	GGTACC	2 cut(s)	150, 222
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	485, 545
AvaII	GGWCC	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	2 cut(s)	150, 222
BbvI	GCAGC	5 cut(s)	58, 451, 454, 463, 482
BccI	CCATC	4 cut(s)	212, 256, 406, 504
BciT130I	CCWGG	3 cut(s)	93, 147, 393
BciVI	GTATCC	3 cut(s)	180, 197, 252
BfaI	CTAG	3 cut(s)	300, 333, 366
BfmI	CTRYAG	2 cut(s)	468, 477
BfuAI	ACCTGC	1 cut(s)	470
BfuI	GTATCC	3 cut(s)	180, 197, 252
BisI	GCNGC	7 cut(s)	72, 86, 465, 468, 471, 474, 477
BlsI	GCNGC	7 cut(s)	73, 87, 466, 469, 472, 475, 478
Bme1390I	CCNGG	3 cut(s)	93, 147, 393
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	152, 224, 529
BmrFI	CCNGG	3 cut(s)	93, 147, 393
BmsI	GCATC	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	91, 146, 532, 556
Bse118I	RCCGGY	4 cut(s)	284, 317, 350, 455
BseBI	CCWGG	3 cut(s)	93, 147, 393
BseDI	CCNNGG	4 cut(s)	91, 146, 532, 556
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	5 cut(s)	58, 451, 454, 463, 482
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	2 cut(s)	150, 222
BsiSI	CCGG	4 cut(s)	285, 318, 351, 456
Bsp143I	GATC	2 cut(s)	95, 425
Bsp19I	CCATGG	2 cut(s)	532, 556
BspACI	CCGC	6 cut(s)	86, 165, 201, 336, 369, 474
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	152, 224, 529
BspMAI	CTGCAG	2 cut(s)	472, 481
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	103, 433
BspT107I	GGYRCC	2 cut(s)	150, 222
BsrFI	RCCGGY	4 cut(s)	284, 317, 350, 455
BssAI	RCCGGY	4 cut(s)	284, 317, 350, 455
BssECI	CCNNGG	4 cut(s)	91, 146, 532, 556
BssMI	GATC	2 cut(s)	95, 425
BssT1I	CCWWGG	2 cut(s)	532, 556
Bst2UI	CCWGG	3 cut(s)	93, 147, 393
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	286, 319, 352
BstDSI	CCRYGG	2 cut(s)	532, 556
BstEII	GGTNACC	2 cut(s)	185, 551
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	98, 428
BstMBI	GATC	2 cut(s)	95, 425
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 461, 470, 473, 476
BstNI	CCWGG	3 cut(s)	93, 147, 393
BstNSI	RCATGY	1 cut(s)	85
BstPI	GGTNACC	2 cut(s)	185, 551
BstSCI	CCNGG	3 cut(s)	91, 145, 391
BstSFI	CTRYAG	2 cut(s)	468, 477
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	58, 451, 454, 463, 482
BstX2I	RGATCY	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	3 cut(s)	180, 197, 252
BtgI	CCRYGG	2 cut(s)	532, 556
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	3 cut(s)	286, 319, 352
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	4 cut(s)	284, 317, 350, 455
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	2 cut(s)	151, 223
CviQI	GTAC	2 cut(s)	151, 223
DpnI	GATC	2 cut(s)	97, 427
DpnII	GATC	2 cut(s)	95, 425
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	532, 556
Eco32I	GATATC	5 cut(s)	122, 275, 308, 341, 374
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	2 cut(s)	185, 551
EcoO65I	GGTNACC	2 cut(s)	185, 551
EcoRII	CCWGG	3 cut(s)	91, 145, 391
EcoRV	GATATC	5 cut(s)	122, 275, 308, 341, 374
EcoT14I	CCWWGG	2 cut(s)	532, 556
ErhI	CCWWGG	2 cut(s)	532, 556
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	7 cut(s)	72, 86, 465, 468, 471, 474, 477
Fsp4HI	GCNGC	7 cut(s)	72, 86, 465, 468, 471, 474, 477
FspBI	CTAG	3 cut(s)	300, 333, 366
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	7 cut(s)	72, 86, 465, 468, 471, 474, 477
HapII	CCGG	4 cut(s)	285, 318, 351, 456
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	4 cut(s)	285, 318, 351, 456
HphI	GGTGA	2 cut(s)	485, 545
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	181, 217
Hpy188III	TCNNGA	2 cut(s)	252, 643
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	168, 222
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	140, 470, 479, 505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 461, 470, 473, 476
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	2 cut(s)	154, 226
KroI	GCCGGC	3 cut(s)	284, 317, 350
KroNI	GCCGGC	3 cut(s)	286, 319, 352
Kzo9I	GATC	2 cut(s)	95, 425
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	5 cut(s)	58, 451, 454, 463, 482
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	300, 333, 366
MaeIII	GTNAC	2 cut(s)	185, 551
MalI	GATC	2 cut(s)	97, 427
MboI	GATC	2 cut(s)	95, 425
MboII	GAAGA	1 cut(s)	534
MflI	RGATCY	1 cut(s)	425
MluCI	AATT	2 cut(s)	575, 614
MroNI	GCCGGC	3 cut(s)	284, 317, 350
MroXI	GAANNNNTTC	1 cut(s)	526
MspA1I	CMGCKG	2 cut(s)	383, 476
MspI	CCGG	4 cut(s)	285, 318, 351, 456
MspR9I	CCNGG	3 cut(s)	93, 147, 393
MvaI	CCWGG	3 cut(s)	93, 147, 393
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	68, 461, 470, 473, 476
NaeI	GCCGGC	3 cut(s)	286, 319, 352
NcoI	CCATGG	2 cut(s)	532, 556
NdeII	GATC	2 cut(s)	95, 425
NgoMIV	GCCGGC	3 cut(s)	284, 317, 350
NlaIV	GGNNCC	3 cut(s)	152, 224, 529
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	85
PdiI	GCCGGC	3 cut(s)	286, 319, 352
PdmI	GAANNNNTTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	7 cut(s)	73, 87, 466, 469, 472, 475, 478
Psp6I	CCWGG	3 cut(s)	91, 145, 391
PspEI	GGTNACC	2 cut(s)	185, 551
PspGI	CCWGG	3 cut(s)	91, 145, 391
PspN4I	GGNNCC	3 cut(s)	152, 224, 529
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	472, 481
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	152, 224
RsaNI	GTAC	2 cut(s)	151, 223
SatI	GCNGC	7 cut(s)	72, 86, 465, 468, 471, 474, 477
Sau3AI	GATC	2 cut(s)	95, 425
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	93, 147, 393
SetI	ASST	7 cut(s)	10, 148, 385, 397, 406, 484, 529
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	2 cut(s)	468, 477
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	575, 614
SsiI	CCGC	6 cut(s)	86, 165, 201, 336, 369, 474
SspMI	CTAG	3 cut(s)	300, 333, 366
StyD4I	CCNGG	3 cut(s)	91, 145, 391
StyI	CCWWGG	2 cut(s)	532, 556
TaaI	ACNGT	1 cut(s)	185
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	2 cut(s)	575, 614
TauI	GCSGC	2 cut(s)	88, 476
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	5 cut(s)	71, 464, 467, 470, 476
Tsp45I	GTSAC	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	575, 614
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	3 cut(s)	300, 333, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.