Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

35247014 .. 35248107

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATAACAAAGACGATCCTAATGACAAAGACAAAGGGCTATTTTCACATCTTGCTGGATATGCTACTGGACACTACCCACAGCATGGAGGATCGTACCCGCCACAAGGATATGGATATCCCCCACAAGGATATGGATACCCTCCTGCAGGCGGGTATCCTCCACAGGGCGGCTATCCTCCACAGGGTGGGTATCCTCCATCTGGATATCCTCCACAGAGTGGGTATCCTCCATCTGGATATCCTCCACAGGGTGGTTATCCTCCATCTGGATATCCTTCCCCTGGCGGATATCCACCAGCCGGGTATCCAGGTCCATCAGCTGCACATCATACAGGGCATGGATCGAACATGGGAGGCCTGCTAGCTGGGGGTGCTGCTGCTGCAGCCGCTGCTTATGGGGCTCACCATCTTGTGCACGGAAGTCACCATGGGGGTTACCATGGCTATGGTCACGGGAAGTTCAAGCATGGCAAACATGGGTTTGGTCATGGGAAATTCAAGCATGGTAAACATGGGTTTGGCCATGGCAAATTTGGCAAGCGATTTGGGTTTGGAGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

19.93

Weight (kDa)

9.6

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	86, 188, 221, 254
AciI	CCGC	5 cut(s)	101, 153, 171, 288, 390
AclWI	GGATC	3 cut(s)	11, 100, 352
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	497, 533
AdeI	CACNNNGTG	3 cut(s)	188, 221, 254
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	466, 502, 568
AjnI	CCWGG	2 cut(s)	283, 310
AluBI	AGCT	2 cut(s)	323, 368
AluI	AGCT	2 cut(s)	323, 368
Alw21I	GWGCWC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	11, 100, 352
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	358, 523
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	6 cut(s)	323, 377, 380, 383, 386, 392
ApoI	RAATTY	2 cut(s)	497, 533
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	398, 419
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	6 cut(s)	310, 364, 367, 370, 379, 398
BccI	CCATC	5 cut(s)	208, 241, 274, 325, 417
BciT130I	CCWGG	2 cut(s)	285, 312
BciVI	GTATCC	5 cut(s)	131, 168, 204, 237, 318
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	147, 384
BfuI	GTATCC	5 cut(s)	131, 168, 204, 237, 318
BisI	GCNGC	8 cut(s)	172, 324, 378, 381, 384, 387, 390, 393
BlsI	GCNGC	8 cut(s)	173, 325, 379, 382, 385, 388, 391, 394
Bme1390I	CCNGG	3 cut(s)	285, 304, 312
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	3 cut(s)	285, 304, 312
BmtI	GCTAGC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	283, 430, 442, 526
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	285, 312
BseDI	CCNNGG	4 cut(s)	283, 430, 442, 526
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	6 cut(s)	310, 364, 367, 370, 379, 398
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	360, 525
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	303
BsnI	GGCC	2 cut(s)	360, 525
Bsp1286I	GDGCHC	2 cut(s)	406, 420
Bsp143I	GATC	3 cut(s)	16, 92, 344
Bsp19I	CCATGG	3 cut(s)	430, 442, 526
BspACI	CCGC	5 cut(s)	101, 153, 171, 288, 390
BspANI	GGCC	2 cut(s)	360, 525
BspMAI	CTGCAG	2 cut(s)	151, 388
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	3 cut(s)	11, 100, 352
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	4 cut(s)	283, 430, 442, 526
BssMI	GATC	3 cut(s)	16, 92, 344
BssT1I	CCWWGG	3 cut(s)	430, 442, 526
Bst2UI	CCWGG	2 cut(s)	285, 312
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	4 cut(s)	151, 362, 366, 542
BstDSI	CCRYGG	3 cut(s)	430, 442, 526
BstEII	GGTNACC	1 cut(s)	437
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstKTI	GATC	3 cut(s)	19, 95, 347
BstMBI	GATC	3 cut(s)	16, 92, 344
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 374, 383, 386, 389, 392, 401, 537
BstNI	CCWGG	2 cut(s)	285, 312
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	283, 302, 310
BstSFI	CTRYAG	2 cut(s)	147, 384
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	310, 364, 367, 370, 379, 398
BstXI	CCANNNNNNTGG	1 cut(s)	449
BsuI	GTATCC	5 cut(s)	131, 168, 204, 237, 318
BsuRI	GGCC	2 cut(s)	360, 525
BtgI	CCRYGG	3 cut(s)	430, 442, 526
Cac8I	GCNNGC	4 cut(s)	151, 362, 366, 542
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	97
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	3 cut(s)	18, 94, 346
DpnII	GATC	3 cut(s)	16, 92, 344
DraIII	CACNNNGTG	3 cut(s)	188, 221, 254
EaeI	YGGCCR	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	3 cut(s)	430, 442, 526
Eco147I	AGGCCT	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	5 cut(s)	119, 209, 242, 275, 293
Eco47I	GGWCC	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	283, 310
EcoRV	GATATC	5 cut(s)	119, 209, 242, 275, 293
EcoT14I	CCWWGG	3 cut(s)	430, 442, 526
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	3 cut(s)	430, 442, 526
FauI	CCCGC	2 cut(s)	108, 146
Fnu4HI	GCNGC	8 cut(s)	172, 324, 378, 381, 384, 387, 390, 393
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	8 cut(s)	172, 324, 378, 381, 384, 387, 390, 393
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	8 cut(s)	172, 324, 378, 381, 384, 387, 390, 393
GsaI	CCCAGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	360, 525
HapII	CCGG	1 cut(s)	303
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	398, 419
Hpy166II	GTNNAC	2 cut(s)	418, 512
Hpy188III	TCNNGA	4 cut(s)	204, 237, 270, 568
Hpy8I	GTNNAC	2 cut(s)	418, 512
HpyAV	CCTTC	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	149, 326, 386, 418
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 374, 383, 386, 389, 392, 401, 537
Kzo9I	GATC	3 cut(s)	16, 92, 344
Lsp1109I	GCAGC	6 cut(s)	310, 364, 367, 370, 379, 398
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	3 cut(s)	425, 437, 452
MalI	GATC	3 cut(s)	18, 94, 346
MboI	GATC	3 cut(s)	16, 92, 344
MhlI	GDGCHC	2 cut(s)	406, 420
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	2 cut(s)	497, 533
MluNI	TGGCCA	1 cut(s)	525
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	323, 392
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	285, 304, 312
MvaI	CCWGG	2 cut(s)	285, 312
MwoI	GCNNNNNNNGC	8 cut(s)	62, 374, 383, 386, 389, 392, 401, 537
NciI	CCSGG	1 cut(s)	304
NcoI	CCATGG	3 cut(s)	430, 442, 526
NdeII	GATC	3 cut(s)	16, 92, 344
NheI	GCTAGC	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	425, 452
PceI	AGGCCT	1 cut(s)	360
PflMI	CCANNNNNTGG	4 cut(s)	86, 188, 221, 254
PkrI	GCNGC	8 cut(s)	173, 325, 379, 382, 385, 388, 391, 394
Psp6I	CCWGG	2 cut(s)	283, 310
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	283, 310
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	2 cut(s)	151, 388
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	8 cut(s)	172, 324, 378, 381, 384, 387, 390, 393
Sau3AI	GATC	3 cut(s)	16, 92, 344
Sau96I	GGNCC	1 cut(s)	314
SbfI	CCTGCAGG	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	285, 304, 312
SdaI	CCTGCAGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	406, 420
SetI	ASST	3 cut(s)	316, 325, 370
SfcI	CTRYAG	2 cut(s)	147, 384
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse8387I	CCTGCAGG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	497, 533
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	5 cut(s)	101, 153, 171, 288, 390
SspMI	CTAG	1 cut(s)	365
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	283, 302, 310
StyI	CCWWGG	3 cut(s)	430, 442, 526
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	497, 533
TauI	GCSGC	2 cut(s)	174, 392
TseFI	GTSAC	2 cut(s)	425, 452
TseI	GCWGC	6 cut(s)	323, 377, 380, 383, 386, 392
Tsp45I	GTSAC	2 cut(s)	425, 452
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	4 cut(s)	86, 188, 221, 254
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	497, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.