Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

32658427 .. 32665435

Gene Structure 7009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG170700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGATAACAAAGACGATCCTAATGACAAAGACAAAGGGCTATTTTCACATCTTGCTGGATATGCTACAGGACACTACCCACAGCATGGAGGATCATACCCTCCACAAGGATATGGGTATCCCCCACAAGGATATGGATACCCTCCTGCAGGTGGGTATCCTCCTCAAGGCGGCTATCCTCCGCAGGGTGGGTATCCTCCATCTGGATATCCTCCACAGGGTGGTTATCCTCCATCTGGATATCCTCCCCCTGGCGGATATCCTCCAGCCGGGTATCCTCCCCAGGGCGGATATCCACCAGCCGGGTATCCAGGTCCATCAGCTGCACATCATACAGGGCATGGATCGAACATGGGAGGTATGCTAGCTGGGGGGGCTGCTGCTGCAGCTGCTGCTTATGGGGCTCACCATCTTGTGCACGGAAGTCACCACGGGGGTTACCATGGCTATGGTCACGGGAAGTTCAAGCATGGCAAACATGGGTTTGGTCATGGGAAATTCAAGCATGGCAAACATGGGTTTGGCCACGGGAAATTTGGCAAGCGCTTTGGGTTTGGAGGCAAGTTCAAGAAATGGAAGGTGTCAATGCAGTCCAATCAACTGAGCTTGATACCTCAAGCAAACGGCAACATCTATTTTGGTGATCCACCCAAAAACTCGAACATCATTGTGGTTTTTGTAGGCATTAATTTCAAGTTGAAAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAAGCCGCGCCCTGGATCACATTCTCATCAAGGACAAGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGCGGATACCCTCCTTCAGATGGCTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCTCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCCAGCTATCCTGCCCCTAGTGGATATCCACCAGCCGGCTATCCTGCCCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGGCATGGATCTGGTATGGGAATGGGAGCTATGTTAGCCGGCGGTGCTGCTGCGGCCGCTGCAGGTTATGGGGTTCACCATCTTGTGCATGGTAGTAGTCATGGAAGTGGTTCCCATGGCTTTGGTTTTGGGGGTCACCATGGCTTTGGTCATGGGAAATTTGGAAAGCATCATGGGGGGAAGTTCAAGCATGGGAAATTTGGAAAGCATCATGGGGGAAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

45.2

Weight (kDa)

9.7

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	2 cut(s)	140, 1148
Acc65I	GGTACC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	810
AccB7I	CCANNNNNTGG	3 cut(s)	86, 221, 1061
AccII	CGCG	1 cut(s)	748
AclWI	GGATC	6 cut(s)	11, 100, 352, 638, 763, 1111
AcoI	YGGCCR	2 cut(s)	523, 1149
AcsI	RAATTY	4 cut(s)	497, 533, 1253, 1292
AcuI	CTGAAG	1 cut(s)	876
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	812
AfeI	AGCGCT	1 cut(s)	545
AgsI	TTSAA	7 cut(s)	466, 502, 568, 694, 700, 1282, 1321
AjnI	CCWGG	6 cut(s)	250, 282, 310, 751, 805, 1069
AluBI	AGCT	8 cut(s)	323, 368, 389, 606, 999, 1061, 1082, 1124
AluI	AGCT	8 cut(s)	323, 368, 389, 606, 999, 1061, 1082, 1124
Alw21I	GWGCWC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	6 cut(s)	11, 100, 352, 638, 763, 1111
AlwNI	CAGNNNCTG	1 cut(s)	392
Aor51HI	AGCGCT	1 cut(s)	545
AoxI	GGCC	2 cut(s)	523, 1149
ApaLI	GTGCAC	1 cut(s)	416
ApoI	RAATTY	4 cut(s)	497, 533, 1253, 1292
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	1204
Asp718I	GGTACC	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	546, 750
AspS9I	GGNCC	2 cut(s)	314, 1073
AsuC2I	CCSGG	2 cut(s)	271, 304
AsuHPI	GGTGA	5 cut(s)	398, 419, 653, 1163, 1223
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	314, 1073
BaeGI	GKGCMC	1 cut(s)	420
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BalI	TGGCCA	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	8 cut(s)	208, 241, 325, 417, 890, 934, 1084, 1182
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	6 cut(s)	252, 284, 312, 753, 807, 1071
BcnI	CCSGG	2 cut(s)	271, 304
BfaI	CTAG	4 cut(s)	365, 978, 1011, 1044
BfmI	CTRYAG	4 cut(s)	66, 147, 384, 1155
BfoI	RGCGCY	1 cut(s)	547
BfuAI	ACCTGC	2 cut(s)	140, 1148
Bme1390I	CCNGG	8 cut(s)	252, 271, 284, 304, 312, 753, 807, 1071
Bme18I	GGWCC	2 cut(s)	314, 1073
BmgT120I	GGNCC	2 cut(s)	314, 1073
BmiI	GGNNCC	2 cut(s)	812, 1207
BmrFI	CCNGG	8 cut(s)	252, 271, 284, 304, 312, 753, 807, 1071
BmsI	GCATC	2 cut(s)	1273, 1312
BmtI	GCTAGC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	3 cut(s)	150, 600, 697
BpuMI	CCSGG	2 cut(s)	271, 304
Bse118I	RCCGGY	3 cut(s)	962, 1028, 1133
BseBI	CCWGG	6 cut(s)	252, 284, 312, 753, 807, 1071
BseMII	CTCAG	1 cut(s)	593
BseRI	GAGGAG	3 cut(s)	153, 897, 930
BseSI	GKGCMC	1 cut(s)	420
BseX3I	CGGCCG	1 cut(s)	1149
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	748
Bsh1285I	CGRYCG	1 cut(s)	1152
BshFI	GGCC	2 cut(s)	525, 1151
BshNI	GGYRCC	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	5 cut(s)	270, 303, 963, 1029, 1134
BsnI	GGCC	2 cut(s)	525, 1151
Bsp1286I	GDGCHC	2 cut(s)	406, 420
Bsp143I	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
Bsp19I	CCATGG	3 cut(s)	442, 1210, 1234
BspANI	GGCC	2 cut(s)	525, 1151
BspCNI	CTCAG	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	812, 1207
BspMAI	CTGCAG	3 cut(s)	151, 388, 1159
BspMI	ACCTGC	2 cut(s)	140, 1148
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	6 cut(s)	11, 100, 352, 638, 763, 1111
BspT107I	GGYRCC	1 cut(s)	810
BsrFI	RCCGGY	3 cut(s)	962, 1028, 1133
BssAI	RCCGGY	3 cut(s)	962, 1028, 1133
BssMI	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
BssT1I	CCWWGG	3 cut(s)	442, 1210, 1234
Bst2UI	CCWGG	6 cut(s)	252, 284, 312, 753, 807, 1071
Bst4CI	ACNGT	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	6 cut(s)	366, 542, 964, 997, 1030, 1135
BstDEI	CTNAG	1 cut(s)	602
BstDSI	CCRYGG	5 cut(s)	430, 442, 526, 1210, 1234
BstEII	GGTNACC	3 cut(s)	437, 863, 1229
BstENI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
BstFNI	CGCG	1 cut(s)	748
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	2 cut(s)	546, 750
BstKTI	GATC	6 cut(s)	19, 95, 347, 646, 758, 1106
BstMBI	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
BstMCI	CGRYCG	1 cut(s)	1152
BstNI	CCWGG	6 cut(s)	252, 284, 312, 753, 807, 1071
BstPI	GGTNACC	3 cut(s)	437, 863, 1229
BstSCI	CCNGG	8 cut(s)	250, 269, 282, 302, 310, 751, 805, 1069
BstSFI	CTRYAG	4 cut(s)	66, 147, 384, 1155
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	1103
BstXI	CCANNNNNNTGG	3 cut(s)	449, 1217, 1241
BstYI	RGATCY	1 cut(s)	1103
BstZI	CGGCCG	1 cut(s)	1149
BsuRI	GGCC	2 cut(s)	525, 1151
BtgI	CCRYGG	5 cut(s)	430, 442, 526, 1210, 1234
BveI	ACCTGC	2 cut(s)	140, 1148
Cac8I	GCNNGC	6 cut(s)	366, 542, 964, 997, 1030, 1135
CaiI	CAGNNNCTG	1 cut(s)	392
CciNI	GCGGCCGC	1 cut(s)	1149
CfoI	GCGC	2 cut(s)	546, 750
Cfr10I	RCCGGY	3 cut(s)	962, 1028, 1133
Cfr13I	GGNCC	2 cut(s)	314, 1073
Csp6I	GTAC	1 cut(s)	811
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	6 cut(s)	18, 94, 346, 645, 757, 1105
DpnII	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
DraIII	CACNNNGTG	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	523, 1149
EagI	CGGCCG	1 cut(s)	1149
EciI	GGCGGA	3 cut(s)	270, 303, 894
EclXI	CGGCCG	1 cut(s)	1149
Eco130I	CCWWGG	3 cut(s)	442, 1210, 1234
Eco24I	GRGCYC	1 cut(s)	406
Eco32I	GATATC	9 cut(s)	209, 242, 260, 293, 782, 953, 986, 1019, 1052
Eco47I	GGWCC	2 cut(s)	314, 1073
Eco47III	AGCGCT	1 cut(s)	545
Eco52I	CGGCCG	1 cut(s)	1149
Eco57I	CTGAAG	1 cut(s)	876
Eco91I	GGTNACC	3 cut(s)	437, 863, 1229
EcoNI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
EcoO65I	GGTNACC	3 cut(s)	437, 863, 1229
EcoRII	CCWGG	6 cut(s)	250, 282, 310, 751, 805, 1069
EcoRV	GATATC	9 cut(s)	209, 242, 260, 293, 782, 953, 986, 1019, 1052
EcoT14I	CCWWGG	3 cut(s)	442, 1210, 1234
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	3 cut(s)	442, 1210, 1234
FauI	CCCGC	2 cut(s)	818, 836
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	4 cut(s)	365, 978, 1011, 1044
GlaI	GCGC	2 cut(s)	545, 749
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	525, 1151
HapII	CCGG	5 cut(s)	270, 303, 963, 1029, 1134
HhaI	GCGC	2 cut(s)	546, 750
Hin6I	GCGC	2 cut(s)	544, 748
HinP1I	GCGC	2 cut(s)	544, 748
HpaII	CCGG	5 cut(s)	270, 303, 963, 1029, 1134
HphI	GGTGA	5 cut(s)	398, 419, 653, 1163, 1223
Hpy166II	GTNNAC	2 cut(s)	418, 1171
Hpy188I	TCNGA	2 cut(s)	859, 895
Hpy188III	TCNNGA	5 cut(s)	204, 237, 568, 930, 1321
Hpy8I	GTNNAC	2 cut(s)	418, 1171
HpyAV	CCTTC	3 cut(s)	571, 828, 900
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4V	TGCA	8 cut(s)	149, 326, 386, 418, 589, 800, 1157, 1183
HpyF3I	CTNAG	1 cut(s)	602
HspAI	GCGC	2 cut(s)	544, 748
KpnI	GGTACC	1 cut(s)	814
KroI	GCCGGC	3 cut(s)	962, 1028, 1133
KroNI	GCCGGC	3 cut(s)	964, 1030, 1135
Kzo9I	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
LmnI	GCTCC	2 cut(s)	1087, 1121
LweI	GCATC	2 cut(s)	1273, 1312
MaeI	CTAG	4 cut(s)	365, 978, 1011, 1044
MaeIII	GTNAC	5 cut(s)	425, 437, 452, 863, 1229
MalI	GATC	6 cut(s)	18, 94, 346, 645, 757, 1105
MboI	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
MflI	RGATCY	1 cut(s)	1103
MhlI	GDGCHC	2 cut(s)	406, 420
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	5 cut(s)	497, 533, 688, 1253, 1292
MluNI	TGGCCA	1 cut(s)	525
Mox20I	TGGCCA	1 cut(s)	525
MroNI	GCCGGC	3 cut(s)	962, 1028, 1133
MroXI	GAANNNNTTC	1 cut(s)	1204
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	3 cut(s)	447, 668, 1200
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	4 cut(s)	323, 389, 1061, 1154
MspI	CCGG	5 cut(s)	270, 303, 963, 1029, 1134
MspR9I	CCNGG	8 cut(s)	252, 271, 284, 304, 312, 753, 807, 1071
MvaI	CCWGG	6 cut(s)	252, 284, 312, 753, 807, 1071
MvnI	CGCG	1 cut(s)	748
NaeI	GCCGGC	3 cut(s)	964, 1030, 1135
NciI	CCSGG	2 cut(s)	271, 304
NcoI	CCATGG	3 cut(s)	442, 1210, 1234
NdeII	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
NgoMIV	GCCGGC	3 cut(s)	962, 1028, 1133
NheI	GCTAGC	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	812, 1207
NmuCI	GTSAC	3 cut(s)	425, 452, 1229
NotI	GCGGCCGC	1 cut(s)	1149
PaqCI	CACCTGC	1 cut(s)	140
PasI	CCCWGGG	1 cut(s)	283
PdiI	GCCGGC	3 cut(s)	964, 1030, 1135
PdmI	GAANNNNTTC	1 cut(s)	1204
PflMI	CCANNNNNTGG	3 cut(s)	86, 221, 1061
PshBI	ATTAAT	1 cut(s)	687
Psp6I	CCWGG	6 cut(s)	250, 282, 310, 751, 805, 1069
PspEI	GGTNACC	3 cut(s)	437, 863, 1229
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	6 cut(s)	250, 282, 310, 751, 805, 1069
PspN4I	GGNNCC	2 cut(s)	812, 1207
PspPI	GGNCC	2 cut(s)	314, 1073
PstI	CTGCAG	3 cut(s)	151, 388, 1159
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	1103
PvuII	CAGCTG	3 cut(s)	323, 389, 1061
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	3 cut(s)	447, 668, 1200
SaqAI	TTAA	1 cut(s)	687
Sau3AI	GATC	6 cut(s)	16, 92, 344, 643, 755, 1103
Sau96I	GGNCC	2 cut(s)	314, 1073
SbfI	CCTGCAGG	1 cut(s)	151
ScrFI	CCNGG	8 cut(s)	252, 271, 284, 304, 312, 753, 807, 1071
SdaI	CCTGCAGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	406, 420
SfaNI	GCATC	2 cut(s)	1273, 1312
SfcI	CTRYAG	4 cut(s)	66, 147, 384, 1155
SinI	GGWCC	2 cut(s)	314, 1073
SmiMI	CAYNNNNRTG	3 cut(s)	447, 668, 1200
SmlI	CTYRAG	3 cut(s)	165, 615, 712
SmoI	CTYRAG	3 cut(s)	165, 615, 712
Sse8387I	CCTGCAGG	1 cut(s)	151
Sse9I	AATT	5 cut(s)	497, 533, 688, 1253, 1292
SspMI	CTAG	4 cut(s)	365, 978, 1011, 1044
StyD4I	CCNGG	8 cut(s)	250, 269, 282, 302, 310, 751, 805, 1069
StyI	CCWWGG	3 cut(s)	442, 1210, 1234
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	2 cut(s)	347, 659
TasI	AATT	5 cut(s)	497, 533, 688, 1253, 1292
TauI	GCSGC	4 cut(s)	174, 748, 1151, 1154
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TseFI	GTSAC	3 cut(s)	425, 452, 1229
Tsp45I	GTSAC	3 cut(s)	425, 452, 1229
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	3 cut(s)	86, 221, 1061
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	314, 1073
VspI	ATTAAT	1 cut(s)	687
XagI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
XapI	RAATTY	4 cut(s)	497, 533, 1253, 1292
XcmI	CCANNNNNNNNNTGG	2 cut(s)	533, 1181
XmnI	GAANNNNTTC	1 cut(s)	1204
XspI	CTAG	4 cut(s)	365, 978, 1011, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.