Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

18180866 .. 18181972

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGAGGTGGAAAGCACGAGAAACATGAGACAAGTGAGAAAGGACTATATTCATATGGTTGTGGTGGATCACACCCTCCACAAGGATATGGATATCCCCCGCAAGCATATGGTGGTGGTGGATCATACCCTCCTTCAGGGGGGTACCCTCCAGCTGCGTATCCTTCTTATGGGGGATATCCACCAACCTCCTACCCTCCACCCGGTTATTCAGGGCATGGATCTGGCATGGGAATGGGAGGGATGTTAGCTGGGGGTGCTGCCGCAGCTGCTGCTGCGTATGGTGCTAACCATCTTGTGCATGGAGCTGGGGCACCCCATGGCTATGGCGTTGGGGCACCCCATGGCTATGGCGCTTACCATGGTTCCCAGGGCTACGGCTACGGGGGTGGCCACGGCTACGGCGGTCATGGCAAATTTAAGCACGGGAAATTTAAGCATGGCAAGCCCTTTGGGGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XYPPX

Protein Analysis

160

Amino Acids

15.87

Weight (kDa)

9.48

Isoelectric Point (pI)

19.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	3 cut(s)	144, 313, 337
AciI	CCGC	3 cut(s)	101, 264, 405
AclWI	GGATC	3 cut(s)	76, 130, 229
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	416, 431
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	6 cut(s)	83, 137, 140, 170, 203, 455
AgsI	TTSAA	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	155, 251, 269, 308
AluI	AGCT	4 cut(s)	155, 251, 269, 308
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	76, 130, 229
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	6 cut(s)	155, 260, 266, 269, 272, 275
ApoI	RAATTY	2 cut(s)	416, 431
Asp718I	GGTACC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	204
BaeGI	GKGCMC	2 cut(s)	316, 340
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	3 cut(s)	144, 313, 337
BauI	CACGAG	1 cut(s)	17
BbvI	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	394, 412, 418
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
BlsI	GCNGC	7 cut(s)	157, 262, 265, 268, 271, 274, 277
Bme1390I	CCNGG	2 cut(s)	204, 371
BmiI	GGNNCC	4 cut(s)	146, 315, 339, 367
BmrFI	CCNGG	2 cut(s)	204, 371
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	6 cut(s)	319, 343, 361, 369, 370, 394
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 137, 140, 170, 203, 455
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	6 cut(s)	319, 343, 361, 369, 370, 394
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	6 cut(s)	83, 137, 140, 170, 203, 455
BseSI	GKGCMC	2 cut(s)	316, 340
BseXI	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BseYI	CCCAGC	2 cut(s)	251, 308
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	3 cut(s)	144, 313, 337
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	6 cut(s)	83, 137, 140, 170, 203, 455
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	316, 340
Bsp143I	GATC	3 cut(s)	68, 122, 221
Bsp19I	CCATGG	3 cut(s)	319, 343, 361
BspACI	CCGC	3 cut(s)	101, 264, 405
BspANI	GGCC	1 cut(s)	393
BspLI	GGNNCC	4 cut(s)	146, 315, 339, 367
BspPI	GGATC	3 cut(s)	76, 130, 229
BspT107I	GGYRCC	3 cut(s)	144, 313, 337
BssECI	CCNNGG	6 cut(s)	319, 343, 361, 369, 370, 394
BssMI	GATC	3 cut(s)	68, 122, 221
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	3 cut(s)	319, 343, 361
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	105, 446
BstDSI	CCRYGG	4 cut(s)	319, 343, 361, 394
BstENI	CCTNNNNNAGG	2 cut(s)	81, 135
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	71, 125, 224
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	68, 122, 221
BstMWI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 411, 445
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	202, 369
BstSLI	GKGCMC	2 cut(s)	316, 340
BstV1I	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	2 cut(s)	326, 350
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	4 cut(s)	319, 343, 361, 394
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	105, 446
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	9 cut(s)	26, 218, 229, 302, 320, 344, 362, 410, 440
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	3 cut(s)	70, 124, 223
DpnII	GATC	3 cut(s)	68, 122, 221
EaeI	YGGCCR	1 cut(s)	391
Eco130I	CCWWGG	3 cut(s)	319, 343, 361
Eco32I	GATATC	2 cut(s)	95, 179
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 135
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	2 cut(s)	95, 179
EcoT14I	CCWWGG	3 cut(s)	319, 343, 361
ErhI	CCWWGG	3 cut(s)	319, 343, 361
FaeI	CATG	9 cut(s)	29, 221, 232, 305, 323, 347, 365, 413, 443
FatI	CATG	9 cut(s)	25, 217, 228, 301, 319, 343, 361, 409, 439
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	2 cut(s)	55, 109
Fnu4HI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
GsaI	CCCAGC	2 cut(s)	255, 312
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	9 cut(s)	29, 221, 232, 305, 323, 347, 365, 413, 443
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	144, 174
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 411, 445
Hsp92II	CATG	9 cut(s)	29, 221, 232, 305, 323, 347, 365, 413, 443
HspAI	GCGC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	68, 122, 221
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	123, 165, 198, 210, 217, 237, 294, 356, 383
Lsp1109I	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
MalI	GATC	3 cut(s)	70, 124, 223
MboI	GATC	3 cut(s)	68, 122, 221
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	316, 340
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	416, 431
MluNI	TGGCCA	1 cut(s)	393
MnlI	CCTC	6 cut(s)	87, 141, 159, 199, 207, 233
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	420, 435
MslI	CAYNNNNRTG	3 cut(s)	233, 324, 348
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	155, 269
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	204, 371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 411, 445
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	3 cut(s)	319, 343, 361
NdeI	CATATG	2 cut(s)	55, 109
NdeII	GATC	3 cut(s)	68, 122, 221
NlaIII	CATG	9 cut(s)	29, 221, 232, 305, 323, 347, 365, 413, 443
NlaIV	GGNNCC	4 cut(s)	146, 315, 339, 367
PasI	CCCWGGG	1 cut(s)	370
PkrI	GCNGC	7 cut(s)	157, 262, 265, 268, 271, 274, 277
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	2 cut(s)	251, 308
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	4 cut(s)	146, 315, 339, 367
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	2 cut(s)	155, 269
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	3 cut(s)	233, 324, 348
SaqAI	TTAA	2 cut(s)	420, 435
SatI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
Sau3AI	GATC	3 cut(s)	68, 122, 221
ScrFI	CCNGG	2 cut(s)	204, 371
SduI	GDGCHC	2 cut(s)	316, 340
SetI	ASST	6 cut(s)	10, 157, 191, 253, 271, 310
SmiMI	CAYNNNNRTG	3 cut(s)	233, 324, 348
Sse9I	AATT	2 cut(s)	416, 431
SsiI	CCGC	3 cut(s)	101, 264, 405
StyD4I	CCNGG	2 cut(s)	202, 369
StyI	CCWWGG	3 cut(s)	319, 343, 361
TasI	AATT	2 cut(s)	416, 431
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	420, 435
Tru9I	TTAA	2 cut(s)	420, 435
TseI	GCWGC	6 cut(s)	155, 260, 266, 269, 272, 275
TspDTI	ATGAA	1 cut(s)	42
XagI	CCTNNNNNAGG	2 cut(s)	81, 135
XapI	RAATTY	2 cut(s)	416, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.