Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

35240451 .. 35245560

Gene Structure 5110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAGGTGGAAAAGACAAAAATAATGATACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAAGCCGCGCCCTGGATCACATTCTCATCAAGGACACGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGCGGATACCCTCCTTCAGATGGCTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTGCCCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGATATCCACCAGCCGGCTATCCTGCCCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGGCATGGATCTGGTATGGGAATGGGAGCTATGTTAGCCGGTGGTGCTGCTGCGGCCGCTGCAGGTTATGGGGTTCACCATCTTGTGCATGGTAGTAATCATGGAAGAGGTTCCCATGGCTTTGGTTTTGGGGGTCACCATGGCTTTGGTCATGGGAAATTTGGAAAGCATCATGGGGGGAAGTTCAAGCATGGGAAATTTGGAAAGCATCATGGGGGAAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

20.74

Weight (kDa)

9.79

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	86, 165, 201, 336, 437, 441
AclWI	GGATC	2 cut(s)	103, 400
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	542, 581
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	571, 610
AjnI	CCWGG	3 cut(s)	91, 145, 358
AluBI	AGCT	3 cut(s)	350, 371, 413
AluI	AGCT	3 cut(s)	350, 371, 413
AlwI	GGATC	2 cut(s)	103, 400
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	4 cut(s)	71, 431, 434, 443
ApoI	RAATTY	2 cut(s)	542, 581
Asp700I	GAANNNNTTC	1 cut(s)	493
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	452, 512
AvaII	GGWCC	1 cut(s)	362
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	58, 418, 421, 430
BccI	CCATC	4 cut(s)	212, 256, 373, 471
BciT130I	CCWGG	3 cut(s)	93, 147, 360
BciVI	GTATCC	3 cut(s)	180, 197, 252
BfaI	CTAG	2 cut(s)	300, 333
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	437
BfuI	GTATCC	3 cut(s)	180, 197, 252
BisI	GCNGC	7 cut(s)	72, 86, 432, 435, 438, 441, 444
BlsI	GCNGC	7 cut(s)	73, 87, 433, 436, 439, 442, 445
Bme1390I	CCNGG	3 cut(s)	93, 147, 360
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	152, 496
BmrFI	CCNGG	3 cut(s)	93, 147, 360
BmsI	GCATC	2 cut(s)	562, 601
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	91, 146, 499, 523
Bse118I	RCCGGY	3 cut(s)	284, 317, 422
BseBI	CCWGG	3 cut(s)	93, 147, 360
BseDI	CCNNGG	4 cut(s)	91, 146, 499, 523
BseRI	GAGGAG	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	438
BseXI	GCAGC	4 cut(s)	58, 418, 421, 430
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	441
BsiSI	CCGG	3 cut(s)	285, 318, 423
BsnI	GGCC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	95, 392
Bsp19I	CCATGG	2 cut(s)	499, 523
BspACI	CCGC	6 cut(s)	86, 165, 201, 336, 437, 441
BspANI	GGCC	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	152, 496
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	103, 400
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	3 cut(s)	284, 317, 422
BssAI	RCCGGY	3 cut(s)	284, 317, 422
BssECI	CCNNGG	4 cut(s)	91, 146, 499, 523
BssMI	GATC	2 cut(s)	95, 392
BssT1I	CCWWGG	2 cut(s)	499, 523
Bst2UI	CCWGG	3 cut(s)	93, 147, 360
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	286, 319
BstDSI	CCRYGG	2 cut(s)	499, 523
BstEII	GGTNACC	2 cut(s)	185, 518
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	98, 395
BstMBI	GATC	2 cut(s)	95, 392
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 419, 428, 437, 440, 443
BstNI	CCWGG	3 cut(s)	93, 147, 360
BstPI	GGTNACC	2 cut(s)	185, 518
BstSCI	CCNGG	3 cut(s)	91, 145, 358
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	58, 418, 421, 430
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	2 cut(s)	506, 530
BstYI	RGATCY	1 cut(s)	392
BstZI	CGGCCG	1 cut(s)	438
BsuI	GTATCC	3 cut(s)	180, 197, 252
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	2 cut(s)	499, 523
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	286, 319
CciNI	GCGGCCGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	3 cut(s)	284, 317, 422
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	9 cut(s)	389, 473, 485, 500, 524, 536, 557, 575, 596
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	97, 394
DpnII	GATC	2 cut(s)	95, 392
EaeI	YGGCCR	1 cut(s)	438
EagI	CGGCCG	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	499, 523
Eco32I	GATATC	4 cut(s)	122, 275, 308, 341
Eco47I	GGWCC	1 cut(s)	362
Eco52I	CGGCCG	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	2 cut(s)	185, 518
EcoO65I	GGTNACC	2 cut(s)	185, 518
EcoRII	CCWGG	3 cut(s)	91, 145, 358
EcoRV	GATATC	4 cut(s)	122, 275, 308, 341
EcoT14I	CCWWGG	2 cut(s)	499, 523
ErhI	CCWWGG	2 cut(s)	499, 523
FaeI	CATG	9 cut(s)	392, 476, 488, 503, 527, 539, 560, 578, 599
FatI	CATG	9 cut(s)	388, 472, 484, 499, 523, 535, 556, 574, 595
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	7 cut(s)	72, 86, 432, 435, 438, 441, 444
Fsp4HI	GCNGC	7 cut(s)	72, 86, 432, 435, 438, 441, 444
FspBI	CTAG	2 cut(s)	300, 333
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	7 cut(s)	72, 86, 432, 435, 438, 441, 444
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	3 cut(s)	285, 318, 423
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	9 cut(s)	392, 476, 488, 503, 527, 539, 560, 578, 599
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	285, 318, 423
HphI	GGTGA	2 cut(s)	452, 512
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	181, 217
Hpy188III	TCNNGA	2 cut(s)	252, 610
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	168, 222
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	140, 446, 472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 419, 428, 437, 440, 443
Hsp92II	CATG	9 cut(s)	392, 476, 488, 503, 527, 539, 560, 578, 599
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	154
KroI	GCCGGC	2 cut(s)	284, 317
KroNI	GCCGGC	2 cut(s)	286, 319
Kzo9I	GATC	2 cut(s)	95, 392
LmnI	GCTCC	2 cut(s)	376, 410
Lsp1109I	GCAGC	4 cut(s)	58, 418, 421, 430
LweI	GCATC	2 cut(s)	562, 601
MaeI	CTAG	2 cut(s)	300, 333
MaeIII	GTNAC	2 cut(s)	185, 518
MalI	GATC	2 cut(s)	97, 394
MboI	GATC	2 cut(s)	95, 392
MboII	GAAGA	1 cut(s)	501
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	2 cut(s)	542, 581
MroNI	GCCGGC	2 cut(s)	284, 317
MroXI	GAANNNNTTC	1 cut(s)	493
MspA1I	CMGCKG	2 cut(s)	350, 443
MspI	CCGG	3 cut(s)	285, 318, 423
MspR9I	CCNGG	3 cut(s)	93, 147, 360
MvaI	CCWGG	3 cut(s)	93, 147, 360
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	6 cut(s)	68, 419, 428, 437, 440, 443
NaeI	GCCGGC	2 cut(s)	286, 319
NcoI	CCATGG	2 cut(s)	499, 523
NdeII	GATC	2 cut(s)	95, 392
NgoMIV	GCCGGC	2 cut(s)	284, 317
NlaIII	CATG	9 cut(s)	392, 476, 488, 503, 527, 539, 560, 578, 599
NlaIV	GGNNCC	2 cut(s)	152, 496
NmuCI	GTSAC	1 cut(s)	518
NotI	GCGGCCGC	1 cut(s)	438
PdiI	GCCGGC	2 cut(s)	286, 319
PdmI	GAANNNNTTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	7 cut(s)	73, 87, 433, 436, 439, 442, 445
Psp6I	CCWGG	3 cut(s)	91, 145, 358
PspEI	GGTNACC	2 cut(s)	185, 518
PspGI	CCWGG	3 cut(s)	91, 145, 358
PspN4I	GGNNCC	2 cut(s)	152, 496
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	7 cut(s)	72, 86, 432, 435, 438, 441, 444
Sau3AI	GATC	2 cut(s)	95, 392
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	93, 147, 360
SetI	ASST	8 cut(s)	10, 148, 352, 364, 373, 415, 451, 496
SfaNI	GCATC	2 cut(s)	562, 601
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	542, 581
SsiI	CCGC	6 cut(s)	86, 165, 201, 336, 437, 441
SspMI	CTAG	2 cut(s)	300, 333
StyD4I	CCNGG	3 cut(s)	91, 145, 358
StyI	CCWWGG	2 cut(s)	499, 523
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	2 cut(s)	542, 581
TauI	GCSGC	3 cut(s)	88, 440, 443
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	4 cut(s)	71, 431, 434, 443
Tsp45I	GTSAC	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	542, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	2 cut(s)	300, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.