Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

27871475 .. 27874208

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1232500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATGGTGGAAGAGACAACAAAGATGATAATGAAAAAGGGCTGTTTTCAAATCTTGCTGGATATGCTGCTGGACACTACCCACAGCATGGAGCCTACCCTCCACAAGGATACGGATATCCTCCGCAAGCGCATGGACCACCGGGTTACCCTCCTCAAGTTGGGTACCCTCCCTATGGTGGGTACCCTCCTTCAGGCGGTTATCCTCCTCCAGGCGGTTATCCTCCTCCGGGCGGTTATCCTCCATCTGGTTATCCTCCCCCTGGGGGTTATCCACCATCTGCTTATCCTGCCCATGGTGGATATCCACCAGCCGGATATCCAGGTTCATCATCTCACCATTCAGGGCATGGACCTAATATTGGAGGGATGCTAGCTGGAGGTGCTGCTGCTGCAGCTGCTGCTTACGGGGCTCACCATCTTGTGCATAGTGGAGGTCACCATGGGTATGGTTATGGAGGTCACCACGGCTATGGACACGGGAAGTTCAAGCACGGCCATGGTCACGGGAAGTTCAAACATGGAAAATTTAAGCACGGGAAGTTTGGCAAGCGCTTTGGATTCGGGGGGAAGTTCAGGAAGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

20.18

Weight (kDa)

9.62

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	165, 183
AccB1I	GGYRCC	2 cut(s)	165, 183
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	4 cut(s)	125, 198, 216, 234
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	167, 185
AfeI	AGCGCT	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	51, 490, 517
AjnI	CCWGG	3 cut(s)	211, 262, 322
AluBI	AGCT	2 cut(s)	377, 398
AluI	AGCT	2 cut(s)	377, 398
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	401
Aor51HI	AGCGCT	1 cut(s)	554
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	7 cut(s)	68, 386, 389, 392, 395, 398, 401
ApoI	RAATTY	1 cut(s)	527
Asp718I	GGTACC	2 cut(s)	165, 183
AspLEI	GCGC	2 cut(s)	133, 555
AspS9I	GGNCC	2 cut(s)	137, 353
AsuC2I	CCSGG	2 cut(s)	144, 231
AsuHPI	GGTGA	4 cut(s)	329, 407, 431, 455
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	137, 353
BanI	GGYRCC	2 cut(s)	165, 183
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	7 cut(s)	55, 373, 376, 379, 385, 388, 407
BccI	CCATC	3 cut(s)	253, 286, 426
BceAI	ACGGC	2 cut(s)	484, 511
BciT130I	CCWGG	3 cut(s)	213, 264, 324
BciVI	GTATCC	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	144, 231
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	7 cut(s)	69, 387, 390, 393, 396, 399, 402
BlsI	GCNGC	7 cut(s)	70, 388, 391, 394, 397, 400, 403
Bme1390I	CCNGG	5 cut(s)	144, 213, 231, 264, 324
Bme18I	GGWCC	2 cut(s)	137, 353
BmgT120I	GGNCC	2 cut(s)	137, 353
BmiI	GGNNCC	3 cut(s)	94, 167, 185
BmrFI	CCNGG	5 cut(s)	144, 213, 231, 264, 324
BmsI	GCATC	1 cut(s)	360
BmtI	GCTAGC	1 cut(s)	377
BpmI	CTGGAG	2 cut(s)	195, 399
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	144, 231
BsaJI	CCNNGG	6 cut(s)	262, 263, 295, 442, 466, 499
BseBI	CCWGG	3 cut(s)	213, 264, 324
BseDI	CCNNGG	6 cut(s)	262, 263, 295, 442, 466, 499
BseGI	GGATG	2 cut(s)	10, 375
BseRI	GAGGAG	3 cut(s)	144, 198, 216
BseXI	GCAGC	7 cut(s)	55, 373, 376, 379, 385, 388, 407
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	2 cut(s)	165, 183
BsiSI	CCGG	3 cut(s)	143, 230, 315
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp19I	CCATGG	3 cut(s)	295, 442, 499
BspACI	CCGC	4 cut(s)	125, 198, 216, 234
BspANI	GGCC	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	94, 167, 185
BspMAI	CTGCAG	1 cut(s)	397
BspOI	GCTAGC	1 cut(s)	377
BspT107I	GGYRCC	2 cut(s)	165, 183
BssECI	CCNNGG	6 cut(s)	262, 263, 295, 442, 466, 499
BssT1I	CCWWGG	3 cut(s)	295, 442, 499
Bst2UI	CCWGG	3 cut(s)	213, 264, 324
Bst6I	CTCTTC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	129, 375, 551
BstDSI	CCRYGG	4 cut(s)	295, 442, 466, 499
BstEII	GGTNACC	3 cut(s)	146, 437, 461
BstENI	CCTNNNNNAGG	3 cut(s)	105, 192, 210
BstF5I	GGATG	2 cut(s)	10, 375
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	133, 555
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 290, 383, 392, 395, 398, 401, 410
BstNI	CCWGG	3 cut(s)	213, 264, 324
BstPI	GGTNACC	3 cut(s)	146, 437, 461
BstSCI	CCNGG	5 cut(s)	142, 211, 229, 262, 322
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	7 cut(s)	55, 373, 376, 379, 385, 388, 407
BstXI	CCANNNNNNTGG	2 cut(s)	449, 473
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	498
BtgI	CCRYGG	4 cut(s)	295, 442, 466, 499
BtsCI	GGATG	2 cut(s)	10, 375
Cac8I	GCNNGC	3 cut(s)	129, 375, 551
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	2 cut(s)	133, 555
Cfr13I	GGNCC	2 cut(s)	137, 353
Csp6I	GTAC	2 cut(s)	166, 184
CviAII	CATG	7 cut(s)	89, 134, 296, 350, 443, 500, 521
CviJI	RGCY	8 cut(s)	43, 95, 314, 377, 398, 413, 471, 498
CviKI_1	RGCY	8 cut(s)	43, 95, 314, 377, 398, 413, 471, 498
CviQI	GTAC	2 cut(s)	166, 184
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	295, 442, 499
Eco24I	GRGCYC	1 cut(s)	415
Eco32I	GATATC	3 cut(s)	119, 305, 320
Eco47I	GGWCC	2 cut(s)	137, 353
Eco47III	AGCGCT	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	3 cut(s)	146, 437, 461
EcoNI	CCTNNNNNAGG	3 cut(s)	105, 192, 210
EcoO65I	GGTNACC	3 cut(s)	146, 437, 461
EcoRII	CCWGG	3 cut(s)	211, 262, 322
EcoRV	GATATC	3 cut(s)	119, 305, 320
EcoT14I	CCWWGG	3 cut(s)	295, 442, 499
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	3 cut(s)	295, 442, 499
FaeI	CATG	7 cut(s)	92, 137, 299, 353, 446, 503, 524
FatI	CATG	7 cut(s)	88, 133, 295, 349, 442, 499, 520
Fnu4HI	GCNGC	7 cut(s)	69, 387, 390, 393, 396, 399, 402
FokI	GGATG	2 cut(s)	17, 382
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	7 cut(s)	69, 387, 390, 393, 396, 399, 402
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	132, 554
GluI	GCNGC	7 cut(s)	69, 387, 390, 393, 396, 399, 402
GsuI	CTGGAG	2 cut(s)	195, 399
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	3 cut(s)	143, 230, 315
HhaI	GCGC	2 cut(s)	133, 555
Hin1II	CATG	7 cut(s)	92, 137, 299, 353, 446, 503, 524
Hin6I	GCGC	2 cut(s)	131, 553
HinP1I	GCGC	2 cut(s)	131, 553
HinfI	GANTC	1 cut(s)	561
HpaII	CCGG	3 cut(s)	143, 230, 315
HphI	GGTGA	4 cut(s)	329, 407, 431, 455
Hpy188III	TCNNGA	1 cut(s)	577
HpyAV	CCTTC	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	395, 427
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 290, 383, 392, 395, 398, 401, 410
Hsp92II	CATG	7 cut(s)	92, 137, 299, 353, 446, 503, 524
HspAI	GCGC	2 cut(s)	131, 553
KpnI	GGTACC	2 cut(s)	169, 187
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	7 cut(s)	55, 373, 376, 379, 385, 388, 407
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	4 cut(s)	146, 437, 461, 503
MboII	GAAGA	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	527
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	3 cut(s)	447, 471, 498
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	143, 230, 315
MspR9I	CCNGG	5 cut(s)	144, 213, 231, 264, 324
MvaI	CCWGG	3 cut(s)	213, 264, 324
MwoI	GCNNNNNNNGC	8 cut(s)	65, 290, 383, 392, 395, 398, 401, 410
NciI	CCSGG	2 cut(s)	144, 231
NcoI	CCATGG	3 cut(s)	295, 442, 499
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	7 cut(s)	92, 137, 299, 353, 446, 503, 524
NlaIV	GGNNCC	3 cut(s)	94, 167, 185
NmuCI	GTSAC	3 cut(s)	437, 461, 503
PasI	CCCWGGG	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	561
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	7 cut(s)	70, 388, 391, 394, 397, 400, 403
Psp6I	CCWGG	3 cut(s)	211, 262, 322
PspEI	GGTNACC	3 cut(s)	146, 437, 461
PspGI	CCWGG	3 cut(s)	211, 262, 322
PspN4I	GGNNCC	3 cut(s)	94, 167, 185
PspPI	GGNCC	2 cut(s)	137, 353
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	167, 185
RsaNI	GTAC	2 cut(s)	166, 184
RseI	CAYNNNNRTG	3 cut(s)	447, 471, 498
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	7 cut(s)	69, 387, 390, 393, 396, 399, 402
Sau96I	GGNCC	2 cut(s)	137, 353
ScrFI	CCNGG	5 cut(s)	144, 213, 231, 264, 324
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	7 cut(s)	328, 358, 379, 385, 400, 439, 463
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	2 cut(s)	137, 353
SmiMI	CAYNNNNRTG	3 cut(s)	447, 471, 498
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	527
SsiI	CCGC	4 cut(s)	125, 198, 216, 234
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	5 cut(s)	142, 211, 229, 262, 322
StyI	CCWWGG	3 cut(s)	295, 442, 499
TasI	AATT	1 cut(s)	527
TfiI	GAWTC	1 cut(s)	561
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseFI	GTSAC	3 cut(s)	437, 461, 503
TseI	GCWGC	7 cut(s)	68, 386, 389, 392, 395, 398, 401
Tsp45I	GTSAC	3 cut(s)	437, 461, 503
TspDTI	ATGAA	2 cut(s)	48, 318
TspGWI	ACGGA	1 cut(s)	129
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	137, 353
XagI	CCTNNNNNAGG	3 cut(s)	105, 192, 210
XapI	RAATTY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.