Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

51265498 .. 51268073

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1214600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGAGGGGGAACAGGAAACAACGACGAGTCTACTGACAGAGGGCTATTTTCAAACCTTGCTGGATTTGCTTCTGGACACCTTGCACGACCTGGATCACACCATGGATATCCCCAAGGTGGATATCCTCCCCAAGCTGGGTACCCCCCTCAAGGCGGTTACCCTCCCCAAGGTGGGTACCCTCCTCAAGGCGGTTACCCTCCCCAAGGTGGATACCCTCCTTCCGGTGGGTACCCTCCATCTGGATATCCTCCCGCAGGATATCCACCAACAGCCCATCCAGCCCCTGGTGGATATCCACCAGCCGGTTATCCAGGTCCATCAGCTCCACATCATTCAGGGCGTGGATCATCAGGTATGGGGATGGGGGCCATGTTAGCTGGGGGTGCTGCTGCCGCAGCTGCTGGCTACGGAGTTCACCATCTTGTGCATGGGAGTCACCATGGTGGCGGATACGGTCATGGCGGCGGATATGGTCATGGCGGTGGATATGGTCATGGTGGCTATGGGGGCTTCGGTCATGGAAAGTTCAAACATGGGAAACATGGAAAGTTTAAGCATGGGAAACATGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

19.49

Weight (kDa)

9.7

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	141, 177, 231
AccB1I	GGYRCC	3 cut(s)	141, 177, 231
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	8 cut(s)	156, 192, 255, 396, 450, 465, 468, 483
AclWI	GGATC	2 cut(s)	103, 355
AfaI	GTAC	3 cut(s)	143, 179, 233
AgsI	TTSAA	3 cut(s)	54, 532, 580
AjnI	CCWGG	3 cut(s)	91, 286, 313
AleI	CACNNNNGTG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	137, 326, 380, 401
AluI	AGCT	4 cut(s)	137, 326, 380, 401
AlwI	GGATC	2 cut(s)	103, 355
AlwNI	CAGNNNCTG	2 cut(s)	287, 404
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	4 cut(s)	389, 392, 398, 401
Asp718I	GGTACC	3 cut(s)	141, 177, 231
AspS9I	GGNCC	2 cut(s)	317, 369
AsuHPI	GGTGA	2 cut(s)	410, 431
AvaII	GGWCC	1 cut(s)	317
BanI	GGYRCC	3 cut(s)	141, 177, 231
BbvI	GCAGC	4 cut(s)	376, 379, 388, 410
BccI	CCATC	5 cut(s)	247, 285, 328, 358, 429
BciT130I	CCWGG	3 cut(s)	93, 288, 315
BciVI	GTATCC	2 cut(s)	206, 446
BfuI	GTATCC	2 cut(s)	206, 446
BisI	GCNGC	6 cut(s)	390, 393, 396, 399, 402, 466
BlsI	GCNGC	6 cut(s)	391, 394, 397, 400, 403, 467
Bme1390I	CCNGG	3 cut(s)	93, 288, 315
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	317, 369
BmiI	GGNNCC	4 cut(s)	143, 179, 233, 370
BmrFI	CCNGG	3 cut(s)	93, 288, 315
BpuEI	CTTGAG	2 cut(s)	135, 171
BsaJI	CCNNGG	6 cut(s)	103, 115, 169, 205, 286, 442
BsaWI	WCCGGW	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	305
BseBI	CCWGG	3 cut(s)	93, 288, 315
BseDI	CCNNGG	6 cut(s)	103, 115, 169, 205, 286, 442
BseGI	GGATG	2 cut(s)	277, 369
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	4 cut(s)	376, 379, 388, 410
BseYI	CCCAGC	2 cut(s)	137, 380
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	3 cut(s)	141, 177, 231
BsiSI	CCGG	2 cut(s)	225, 306
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	95, 347
Bsp19I	CCATGG	2 cut(s)	103, 442
BspACI	CCGC	8 cut(s)	156, 192, 255, 396, 450, 465, 468, 483
BspANI	GGCC	1 cut(s)	371
BspLI	GGNNCC	4 cut(s)	143, 179, 233, 370
BspPI	GGATC	2 cut(s)	103, 355
BspT107I	GGYRCC	3 cut(s)	141, 177, 231
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	6 cut(s)	103, 115, 169, 205, 286, 442
BssMI	GATC	2 cut(s)	95, 347
BssT1I	CCWWGG	5 cut(s)	103, 115, 169, 205, 442
Bst2UI	CCWGG	3 cut(s)	93, 288, 315
Bst4CI	ACNGT	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	406
BstDSI	CCRYGG	2 cut(s)	103, 442
BstEII	GGTNACC	2 cut(s)	158, 194
BstENI	CCTNNNNNAGG	4 cut(s)	168, 186, 204, 255
BstF5I	GGATG	2 cut(s)	277, 369
BstKTI	GATC	2 cut(s)	98, 350
BstMBI	GATC	2 cut(s)	95, 347
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 281, 377, 386, 395, 398, 401, 510
BstNI	CCWGG	3 cut(s)	93, 288, 315
BstPI	GGTNACC	2 cut(s)	158, 194
BstSCI	CCNGG	3 cut(s)	91, 286, 313
BstV1I	GCAGC	4 cut(s)	376, 379, 388, 410
BsuI	GTATCC	2 cut(s)	206, 446
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	2 cut(s)	103, 442
BtsCI	GGATG	2 cut(s)	277, 369
Cac8I	GCNNGC	1 cut(s)	406
CaiI	CAGNNNCTG	2 cut(s)	287, 404
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	317, 369
Csp6I	GTAC	3 cut(s)	142, 178, 232
CviQI	GTAC	3 cut(s)	142, 178, 232
DpnI	GATC	2 cut(s)	97, 349
DpnII	GATC	2 cut(s)	95, 347
EciI	GGCGGA	2 cut(s)	465, 483
Eco130I	CCWWGG	5 cut(s)	103, 115, 169, 205, 442
Eco32I	GATATC	5 cut(s)	110, 125, 248, 263, 296
Eco47I	GGWCC	1 cut(s)	317
Eco91I	GGTNACC	2 cut(s)	158, 194
EcoNI	CCTNNNNNAGG	4 cut(s)	168, 186, 204, 255
EcoO65I	GGTNACC	2 cut(s)	158, 194
EcoRII	CCWGG	3 cut(s)	91, 286, 313
EcoRV	GATATC	5 cut(s)	110, 125, 248, 263, 296
EcoT14I	CCWWGG	5 cut(s)	103, 115, 169, 205, 442
ErhI	CCWWGG	5 cut(s)	103, 115, 169, 205, 442
FauI	CCCGC	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	6 cut(s)	390, 393, 396, 399, 402, 466
FokI	GGATG	2 cut(s)	264, 376
Fsp4HI	GCNGC	6 cut(s)	390, 393, 396, 399, 402, 466
GluI	GCNGC	6 cut(s)	390, 393, 396, 399, 402, 466
GsaI	CCCAGC	2 cut(s)	141, 384
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	225, 306
HinfI	GANTC	2 cut(s)	29, 436
HpaII	CCGG	2 cut(s)	225, 306
HphI	GGTGA	2 cut(s)	410, 431
Hpy166II	GTNNAC	2 cut(s)	33, 418
Hpy188III	TCNNGA	3 cut(s)	75, 243, 580
Hpy8I	GTNNAC	2 cut(s)	33, 418
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	2 cut(s)	86, 430
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 281, 377, 386, 395, 398, 401, 510
KpnI	GGTACC	3 cut(s)	145, 181, 235
Kzo9I	GATC	2 cut(s)	95, 347
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	4 cut(s)	376, 379, 388, 410
MaeIII	GTNAC	3 cut(s)	158, 194, 437
MalI	GATC	2 cut(s)	97, 349
MboI	GATC	2 cut(s)	95, 347
MlyI	GAGTC	2 cut(s)	38, 445
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	444, 483
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	2 cut(s)	225, 306
MspR9I	CCNGG	3 cut(s)	93, 288, 315
MvaI	CCWGG	3 cut(s)	93, 288, 315
MwoI	GCNNNNNNNGC	8 cut(s)	68, 281, 377, 386, 395, 398, 401, 510
NcoI	CCATGG	2 cut(s)	103, 442
NdeII	GATC	2 cut(s)	95, 347
NlaIV	GGNNCC	4 cut(s)	143, 179, 233, 370
NmuCI	GTSAC	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	6 cut(s)	391, 394, 397, 400, 403, 467
PleI	GAGTC	2 cut(s)	37, 444
PpsI	GAGTC	2 cut(s)	37, 444
Psp6I	CCWGG	3 cut(s)	91, 286, 313
PspEI	GGTNACC	2 cut(s)	158, 194
PspFI	CCCAGC	2 cut(s)	137, 380
PspGI	CCWGG	3 cut(s)	91, 286, 313
PspN4I	GGNNCC	4 cut(s)	143, 179, 233, 370
PspPI	GGNCC	2 cut(s)	317, 369
PstNI	CAGNNNCTG	2 cut(s)	287, 404
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	143, 179, 233
RsaNI	GTAC	3 cut(s)	142, 178, 232
RseI	CAYNNNNRTG	2 cut(s)	444, 483
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	390, 393, 396, 399, 402, 466
Sau3AI	GATC	2 cut(s)	95, 347
Sau96I	GGNCC	2 cut(s)	317, 369
SchI	GAGTC	2 cut(s)	38, 445
ScrFI	CCNGG	3 cut(s)	93, 288, 315
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	444, 483
SmlI	CTYRAG	2 cut(s)	150, 186
SmoI	CTYRAG	2 cut(s)	150, 186
SsiI	CCGC	8 cut(s)	156, 192, 255, 396, 450, 465, 468, 483
StyD4I	CCNGG	3 cut(s)	91, 286, 313
StyI	CCWWGG	5 cut(s)	103, 115, 169, 205, 442
TaaI	ACNGT	1 cut(s)	458
TaqII	GACCGA	1 cut(s)	506
TauI	GCSGC	2 cut(s)	398, 468
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	4 cut(s)	389, 392, 398, 401
Tsp45I	GTSAC	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	4 cut(s)	168, 186, 204, 255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 428
XmiI	GTMKAC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.