Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

7771408 .. 7773412

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATAACAAAGACGATCAGAATAACAAAGACAAAGGGCTGTTTTCACATCTTGCTGGATATGCTACCGGACACTACCCACAGCATGGAGGATCATACCCTCCTCAAGGATATGGATATCCCCCACAAGGGTATGGATACCCCCCTGCAGGCGGCTATCCTCCTCATGGCGGTGGCGGCTATCCTCCACACGGTGGCTATCCTCCACATGGGGGTTATCCTCCATCCGGATATCCTCCCCCTGGCGGATATCCACCAGCTGCTTATCCCAGCCATAGTGGATATCCACCATCTGGGTATCCCGGTGCACATCATACAGGGCATGGGCCTAACATGGGAGGTATGTTAGCTGGGGGTGCTGCTGCTGCAGTTGCTGCTTATGGGGCTCACCATCTTGTGCACGGGAGTCACCATGGGGGTTACCATGGCTATGGTCACGGGAAGTTCAAGCATGGGAAACATGGGTATGGTCATGGGAAATTTAAGCATGGCAAACATGGGTTTGGTCATGGGAAATTTGGCAAGCGCTTTGGGTTTGGAGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

19.44

Weight (kDa)

9.66

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	86, 194, 293
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	4 cut(s)	153, 171, 177, 246
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	479, 515
AdeI	CACNNNGTG	1 cut(s)	194
AfeI	AGCGCT	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	448, 550
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	260, 350
AluI	AGCT	2 cut(s)	260, 350
Alw21I	GWGCWC	2 cut(s)	310, 402
Alw44I	GTGCAC	2 cut(s)	306, 398
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	527
AoxI	GGCC	1 cut(s)	326
ApaLI	GTGCAC	2 cut(s)	306, 398
ApeKI	GCWGC	5 cut(s)	260, 359, 362, 365, 374
ApoI	RAATTY	2 cut(s)	479, 515
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	380, 401
BaeGI	GKGCMC	2 cut(s)	310, 402
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	2 cut(s)	310, 402
BbvI	GCAGC	5 cut(s)	247, 346, 349, 352, 361
BccI	CCATC	3 cut(s)	232, 298, 399
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	131, 309
BcnI	CCSGG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	147, 366
BfoI	RGCGCY	1 cut(s)	529
BfuI	GTATCC	2 cut(s)	131, 309
BisI	GCNGC	7 cut(s)	154, 178, 261, 360, 363, 366, 375
BlsI	GCNGC	7 cut(s)	155, 179, 262, 361, 364, 367, 376
Bme1390I	CCNGG	2 cut(s)	243, 303
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	2 cut(s)	243, 303
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	241, 412, 424
BsaWI	WCCGGW	2 cut(s)	68, 227
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	241, 412, 424
BseGI	GGATG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	93, 153
BseSI	GKGCMC	2 cut(s)	310, 402
BseXI	GCAGC	5 cut(s)	247, 346, 349, 352, 361
BseYI	CCCAGC	2 cut(s)	269, 350
BshFI	GGCC	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	310, 402
BsiSI	CCGG	3 cut(s)	69, 228, 303
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	3 cut(s)	310, 388, 402
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	16, 92
Bsp19I	CCATGG	2 cut(s)	412, 424
BspACI	CCGC	4 cut(s)	153, 171, 177, 246
BspANI	GGCC	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	227
BspMAI	CTGCAG	2 cut(s)	151, 370
BspPI	GGATC	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	241, 412, 424
BssMI	GATC	2 cut(s)	16, 92
BssT1I	CCWWGG	2 cut(s)	412, 424
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	151, 524
BstDSI	CCRYGG	2 cut(s)	412, 424
BstEII	GGTNACC	1 cut(s)	419
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	2 cut(s)	19, 95
BstMBI	GATC	2 cut(s)	16, 92
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 177, 356, 365, 371, 374, 383
BstNI	CCWGG	1 cut(s)	243
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	241, 301
BstSFI	CTRYAG	2 cut(s)	147, 366
BstSLI	GKGCMC	2 cut(s)	310, 402
BstV1I	GCAGC	5 cut(s)	247, 346, 349, 352, 361
BstXI	CCANNNNNNTGG	1 cut(s)	431
BsuI	GTATCC	2 cut(s)	131, 309
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	2 cut(s)	412, 424
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	151, 524
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	326
DpnI	GATC	2 cut(s)	18, 94
DpnII	GATC	2 cut(s)	16, 92
DraIII	CACNNNGTG	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	412, 424
Eco24I	GRGCYC	1 cut(s)	388
Eco32I	GATATC	4 cut(s)	119, 233, 251, 284
Eco47III	AGCGCT	1 cut(s)	527
Eco91I	GGTNACC	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	4 cut(s)	119, 233, 251, 284
EcoT14I	CCWWGG	2 cut(s)	412, 424
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	412, 424
Fnu4HI	GCNGC	7 cut(s)	154, 178, 261, 360, 363, 366, 375
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	7 cut(s)	154, 178, 261, 360, 363, 366, 375
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	7 cut(s)	154, 178, 261, 360, 363, 366, 375
GsaI	CCCAGC	2 cut(s)	273, 354
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	3 cut(s)	69, 228, 303
HhaI	GCGC	1 cut(s)	528
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	3 cut(s)	69, 228, 303
HphI	GGTGA	2 cut(s)	380, 401
Hpy166II	GTNNAC	2 cut(s)	308, 400
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	228, 550
Hpy8I	GTNNAC	2 cut(s)	308, 400
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	149, 308, 368, 400
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 177, 356, 365, 371, 374, 383
HspAI	GCGC	1 cut(s)	526
Kpn2I	TCCGGA	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	16, 92
Lsp1109I	GCAGC	5 cut(s)	247, 346, 349, 352, 361
MaeIII	GTNAC	3 cut(s)	407, 419, 434
MalI	GATC	2 cut(s)	18, 94
MboI	GATC	2 cut(s)	16, 92
MhlI	GDGCHC	3 cut(s)	310, 388, 402
MluCI	AATT	2 cut(s)	479, 515
MlyI	GAGTC	1 cut(s)	415
MroI	TCCGGA	1 cut(s)	227
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	3 cut(s)	171, 429, 465
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	69, 228, 303
MspR9I	CCNGG	2 cut(s)	243, 303
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	7 cut(s)	62, 177, 356, 365, 371, 374, 383
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	2 cut(s)	412, 424
NdeII	GATC	2 cut(s)	16, 92
NmuCI	GTSAC	2 cut(s)	407, 434
PflMI	CCANNNNNTGG	3 cut(s)	86, 194, 293
PkrI	GCNGC	7 cut(s)	155, 179, 262, 361, 364, 367, 376
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	2 cut(s)	269, 350
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	2 cut(s)	151, 370
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	260
RseI	CAYNNNNRTG	3 cut(s)	171, 429, 465
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	7 cut(s)	154, 178, 261, 360, 363, 366, 375
Sau3AI	GATC	2 cut(s)	16, 92
Sau96I	GGNCC	1 cut(s)	326
SbfI	CCTGCAGG	1 cut(s)	151
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	243, 303
SdaI	CCTGCAGG	1 cut(s)	151
SduI	GDGCHC	3 cut(s)	310, 388, 402
SetI	ASST	3 cut(s)	262, 343, 352
SfcI	CTRYAG	2 cut(s)	147, 366
SmiMI	CAYNNNNRTG	3 cut(s)	171, 429, 465
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse8387I	CCTGCAGG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	479, 515
SsiI	CCGC	4 cut(s)	153, 171, 177, 246
StyD4I	CCNGG	2 cut(s)	241, 301
StyI	CCWWGG	2 cut(s)	412, 424
TaaI	ACNGT	1 cut(s)	194
TasI	AATT	2 cut(s)	479, 515
TauI	GCSGC	2 cut(s)	156, 180
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	407, 434
TseI	GCWGC	5 cut(s)	260, 359, 362, 365, 374
Tsp45I	GTSAC	2 cut(s)	407, 434
Van91I	CCANNNNNTGG	3 cut(s)	86, 194, 293
VneI	GTGCAC	2 cut(s)	306, 398
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	479, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.