Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

27856068 .. 27858153

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1232400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGAGGTGGAAAGCAGGAGAAACATGAGACAAGTGAGAAAGGACTATTTTCATATGGTTATGGTGGATCACACCCTCCACAAGGATATGGATATCCCCCGCAAGCATATGGTGGTGGTGGATCATACCCTTCTTCAGGGGGGTACCCTCCAGCTGCGTATCCTTCTTATGGGGGATATCCACCAACCTCCTACCCTCCACCCGGTTATTCAGGGCATGGATCTGGCATGGGAATGGGAGGGATGTTAGCTGGGGGTGCTGCCGCAGCTGCTGCTGCGTATGGTGCTAACCATCTTGTGCATGGAACTGGGGCACCCCATGGCTATGGCGCTTACCATGGTTCCCAGGGCTACGGCTACGGGGGAGGCCACGGCTACGGCGGTCATGGCAAATTTAAGCACGGGAAATTTAAGCATGGCAAGTATGGCAAGCCCTTTGGGGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XYPPX

Protein Analysis

155

Amino Acids

15.53

Weight (kDa)

9.59

Isoelectric Point (pI)

21.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	2 cut(s)	144, 313
AciI	CCGC	3 cut(s)	101, 264, 381
AclWI	GGATC	3 cut(s)	76, 130, 229
AcsI	RAATTY	2 cut(s)	392, 407
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	5 cut(s)	83, 137, 170, 203, 440
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	155, 251, 269
AluI	AGCT	3 cut(s)	155, 251, 269
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	76, 130, 229
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	6 cut(s)	155, 260, 266, 269, 272, 275
ApoI	RAATTY	2 cut(s)	392, 407
Asp718I	GGTACC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	144, 313
BbvI	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	370, 388, 394
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
BlsI	GCNGC	7 cut(s)	157, 262, 265, 268, 271, 274, 277
Bme1390I	CCNGG	2 cut(s)	204, 347
BmiI	GGNNCC	3 cut(s)	146, 315, 343
BmrFI	CCNGG	2 cut(s)	204, 347
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	5 cut(s)	319, 337, 345, 346, 370
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 137, 170, 203, 440
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	319, 337, 345, 346, 370
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	5 cut(s)	83, 137, 170, 203, 440
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	2 cut(s)	144, 313
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	5 cut(s)	83, 137, 170, 203, 440
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	68, 122, 221
Bsp19I	CCATGG	2 cut(s)	319, 337
BspACI	CCGC	3 cut(s)	101, 264, 381
BspANI	GGCC	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	146, 315, 343
BspPI	GGATC	3 cut(s)	76, 130, 229
BspT107I	GGYRCC	2 cut(s)	144, 313
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	319, 337, 345, 346, 370
BssMI	GATC	3 cut(s)	68, 122, 221
BssT1I	CCWWGG	2 cut(s)	319, 337
Bst2UI	CCWGG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	105, 431
BstDSI	CCRYGG	3 cut(s)	319, 337, 370
BstENI	CCTNNNNNAGG	2 cut(s)	81, 135
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	71, 125, 224
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	68, 122, 221
BstMWI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 387, 426
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	202, 345
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	3 cut(s)	319, 337, 370
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	105, 431
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	8 cut(s)	26, 218, 229, 302, 320, 338, 386, 416
CviJI	RGCY	9 cut(s)	155, 251, 269, 324, 351, 357, 369, 375, 433
CviKI_1	RGCY	9 cut(s)	155, 251, 269, 324, 351, 357, 369, 375, 433
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	3 cut(s)	70, 124, 223
DpnII	GATC	3 cut(s)	68, 122, 221
Eco130I	CCWWGG	2 cut(s)	319, 337
Eco32I	GATATC	2 cut(s)	95, 179
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 135
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	2 cut(s)	95, 179
EcoT14I	CCWWGG	2 cut(s)	319, 337
ErhI	CCWWGG	2 cut(s)	319, 337
FaeI	CATG	8 cut(s)	29, 221, 232, 305, 323, 341, 389, 419
FatI	CATG	8 cut(s)	25, 217, 228, 301, 319, 337, 385, 415
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	2 cut(s)	55, 109
Fnu4HI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	8 cut(s)	29, 221, 232, 305, 323, 341, 389, 419
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	141, 174
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 387, 426
Hsp92II	CATG	8 cut(s)	29, 221, 232, 305, 323, 341, 389, 419
HspAI	GCGC	1 cut(s)	330
KpnI	GGTACC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	68, 122, 221
Lsp1109I	GCAGC	6 cut(s)	142, 247, 256, 259, 262, 278
MalI	GATC	3 cut(s)	70, 124, 223
MboI	GATC	3 cut(s)	68, 122, 221
MboII	GAAGA	1 cut(s)	126
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	2 cut(s)	392, 407
MnlI	CCTC	6 cut(s)	87, 159, 199, 207, 233, 359
MseI	TTAA	2 cut(s)	396, 411
MslI	CAYNNNNRTG	2 cut(s)	233, 324
MspA1I	CMGCKG	2 cut(s)	155, 269
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	204, 347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	8 cut(s)	257, 266, 269, 272, 275, 284, 387, 426
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	2 cut(s)	319, 337
NdeI	CATATG	2 cut(s)	55, 109
NdeII	GATC	3 cut(s)	68, 122, 221
NlaIII	CATG	8 cut(s)	29, 221, 232, 305, 323, 341, 389, 419
NlaIV	GGNNCC	3 cut(s)	146, 315, 343
PasI	CCCWGGG	1 cut(s)	346
PkrI	GCNGC	7 cut(s)	157, 262, 265, 268, 271, 274, 277
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	146, 315, 343
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	2 cut(s)	155, 269
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	233, 324
SaqAI	TTAA	2 cut(s)	396, 411
SatI	GCNGC	7 cut(s)	156, 261, 264, 267, 270, 273, 276
Sau3AI	GATC	3 cut(s)	68, 122, 221
ScrFI	CCNGG	2 cut(s)	204, 347
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	5 cut(s)	10, 157, 191, 253, 271
SmiMI	CAYNNNNRTG	2 cut(s)	233, 324
Sse9I	AATT	2 cut(s)	392, 407
SsiI	CCGC	3 cut(s)	101, 264, 381
StyD4I	CCNGG	2 cut(s)	202, 345
StyI	CCWWGG	2 cut(s)	319, 337
TasI	AATT	2 cut(s)	392, 407
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	396, 411
Tru9I	TTAA	2 cut(s)	396, 411
TseI	GCWGC	6 cut(s)	155, 260, 266, 269, 272, 275
TspDTI	ATGAA	1 cut(s)	42
XagI	CCTNNNNNAGG	2 cut(s)	81, 135
XapI	RAATTY	2 cut(s)	392, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.