Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

16425765 .. 16429738

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGAGGGGGAACAAACAACAATGATGAGTCTAGTGACAGAGGGCTATTTTCAAATCTTGCTGGCTTTGCTGCTGGACACTTTCCCCGGCCTGGATCACACAATGGATATCCCCAACAAGGTTACCCTCCTCAAGGCGGGTACCCTCCCCAAGGCGGGTACCCTCCTCAAGGCGGCTATCCTCCCCACGGCGGGTACCCTCCCCAAGGCGGGTACCCTCCCCAAGGGGGATACCCTCCCCATGGTGGACACTCTCCTTCGGGTGGGTACCCTCCATCTGGGTATCCTACTACCCCTGCAGGATATCCACCAACCGCCCATCCTGCGGCTGGTGGATATCCGCCAGCCAGTTATCCAGGTCAATCAGCTCCACATCATTCAGGGCGTGGATCTGGCATGGGAATGGGAACGATGCTAGCTGGGGGTGCTGCTGCCGCGGCTGCTGGTTACGGGGTTCACCATCTTGTTCATGGGCGTGGTGGTGGTGGTGGCGGCGGCGGCTATGGTTATGGGGGTTACCCTGGTGGCTTTGGTCATGGGAAGTTCAAGCATGGCAAACATGGCAAGTTTAAGCATGGAAAGCATGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

20.12

Weight (kDa)

9.77

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	5 cut(s)	141, 159, 195, 213, 267
AccB1I	GGYRCC	5 cut(s)	141, 159, 195, 213, 267
AccII	CGCG	1 cut(s)	437
AclWI	GGATC	2 cut(s)	103, 397
AfaI	GTAC	5 cut(s)	143, 161, 197, 215, 269
AgsI	TTSAA	3 cut(s)	54, 547, 595
AjnI	CCWGG	3 cut(s)	91, 355, 520
AluBI	AGCT	2 cut(s)	368, 419
AluI	AGCT	2 cut(s)	368, 419
AlwI	GGATC	2 cut(s)	103, 397
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	4 cut(s)	71, 428, 431, 440
Asp718I	GGTACC	5 cut(s)	141, 159, 195, 213, 267
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	415
BanI	GGYRCC	5 cut(s)	141, 159, 195, 213, 267
BbvI	GCAGC	4 cut(s)	58, 415, 418, 427
BccI	CCATC	3 cut(s)	283, 327, 468
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	93, 357, 522
BciVI	GTATCC	2 cut(s)	224, 294
BcnI	CCSGG	1 cut(s)	88
BfaI	CTAG	2 cut(s)	33, 416
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	2 cut(s)	224, 294
Bme1390I	CCNGG	4 cut(s)	88, 93, 357, 522
BmiI	GGNNCC	5 cut(s)	143, 161, 197, 215, 269
BmrFI	CCNGG	4 cut(s)	88, 93, 357, 522
BmsI	GCATC	1 cut(s)	402
BmtI	GCTAGC	1 cut(s)	419
BpuEI	CTTGAG	2 cut(s)	117, 153
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	8 cut(s)	86, 151, 187, 205, 223, 241, 435, 520
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	93, 357, 522
BseDI	CCNNGG	8 cut(s)	86, 151, 187, 205, 223, 241, 435, 520
BseGI	GGATG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	120, 156
BseXI	GCAGC	4 cut(s)	58, 415, 418, 427
BseYI	CCCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	5 cut(s)	141, 159, 195, 213, 267
BsiSI	CCGG	1 cut(s)	88
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	95, 389
Bsp19I	CCATGG	1 cut(s)	241
BspANI	GGCC	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	5 cut(s)	143, 161, 197, 215, 269
BspMAI	CTGCAG	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	103, 397
BspT107I	GGYRCC	5 cut(s)	141, 159, 195, 213, 267
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	8 cut(s)	86, 151, 187, 205, 223, 241, 435, 520
BssMI	GATC	2 cut(s)	95, 389
BssT1I	CCWWGG	4 cut(s)	151, 205, 223, 241
Bst2UI	CCWGG	3 cut(s)	93, 357, 522
BstC8I	GCNNGC	3 cut(s)	64, 345, 417
BstDSI	CCRYGG	3 cut(s)	187, 241, 435
BstEII	GGTNACC	2 cut(s)	122, 515
BstENI	CCTNNNNNAGG	5 cut(s)	132, 150, 168, 204, 222
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	2 cut(s)	98, 392
BstMBI	GATC	2 cut(s)	95, 389
BstMWI	GCNNNNNNNGC	9 cut(s)	68, 323, 425, 434, 437, 440, 498, 561, 580
BstNI	CCWGG	3 cut(s)	93, 357, 522
BstPI	GGTNACC	2 cut(s)	122, 515
BstSCI	CCNGG	4 cut(s)	86, 91, 355, 520
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	4 cut(s)	58, 415, 418, 427
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	2 cut(s)	224, 294
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	3 cut(s)	187, 241, 435
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	64, 345, 417
Cfr42I	CCGCGG	1 cut(s)	438
Csp6I	GTAC	5 cut(s)	142, 160, 196, 214, 268
CviAII	CATG	8 cut(s)	242, 397, 470, 536, 551, 560, 575, 584
CviQI	GTAC	5 cut(s)	142, 160, 196, 214, 268
DpnI	GATC	2 cut(s)	97, 391
DpnII	GATC	2 cut(s)	95, 389
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	4 cut(s)	151, 205, 223, 241
Eco32I	GATATC	3 cut(s)	110, 305, 338
Eco91I	GGTNACC	2 cut(s)	122, 515
EcoNI	CCTNNNNNAGG	5 cut(s)	132, 150, 168, 204, 222
EcoO65I	GGTNACC	2 cut(s)	122, 515
EcoRII	CCWGG	3 cut(s)	91, 355, 520
EcoRV	GATATC	3 cut(s)	110, 305, 338
EcoT14I	CCWWGG	4 cut(s)	151, 205, 223, 241
ErhI	CCWWGG	4 cut(s)	151, 205, 223, 241
FaeI	CATG	8 cut(s)	245, 400, 473, 539, 554, 563, 578, 587
FatI	CATG	8 cut(s)	241, 396, 469, 535, 550, 559, 574, 583
FauI	CCCGC	4 cut(s)	131, 149, 185, 203
FokI	GGATG	1 cut(s)	306
FspBI	CTAG	2 cut(s)	33, 416
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	8 cut(s)	245, 400, 473, 539, 554, 563, 578, 587
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	248, 457
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	2 cut(s)	248, 457
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	9 cut(s)	68, 323, 425, 434, 437, 440, 498, 561, 580
Hsp92II	CATG	8 cut(s)	245, 400, 473, 539, 554, 563, 578, 587
KpnI	GGTACC	5 cut(s)	145, 163, 199, 217, 271
KspI	CCGCGG	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	95, 389
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	4 cut(s)	58, 415, 418, 427
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	33, 416
MaeIII	GTNAC	4 cut(s)	35, 122, 446, 515
MalI	GATC	2 cut(s)	97, 391
MboI	GATC	2 cut(s)	95, 389
MflI	RGATCY	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	2 cut(s)	401, 474
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	4 cut(s)	88, 93, 357, 522
MvaI	CCWGG	3 cut(s)	93, 357, 522
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	9 cut(s)	68, 323, 425, 434, 437, 440, 498, 561, 580
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	95, 389
NheI	GCTAGC	1 cut(s)	415
NlaIII	CATG	8 cut(s)	245, 400, 473, 539, 554, 563, 578, 587
NlaIV	GGNNCC	5 cut(s)	143, 161, 197, 215, 269
NmuCI	GTSAC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	91, 355, 520
PspEI	GGTNACC	2 cut(s)	122, 515
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	3 cut(s)	91, 355, 520
PspN4I	GGNNCC	5 cut(s)	143, 161, 197, 215, 269
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	5 cut(s)	143, 161, 197, 215, 269
RsaNI	GTAC	5 cut(s)	142, 160, 196, 214, 268
RseI	CAYNNNNRTG	2 cut(s)	401, 474
SacII	CCGCGG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	570
Sau3AI	GATC	2 cut(s)	95, 389
SbfI	CCTGCAGG	1 cut(s)	301
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	4 cut(s)	88, 93, 357, 522
SdaI	CCTGCAGG	1 cut(s)	301
SetI	ASST	4 cut(s)	124, 361, 370, 421
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	297
Sfr303I	CCGCGG	1 cut(s)	438
SgrBI	CCGCGG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	401, 474
SmlI	CTYRAG	2 cut(s)	132, 168
SmoI	CTYRAG	2 cut(s)	132, 168
Sse8387I	CCTGCAGG	1 cut(s)	301
SspMI	CTAG	2 cut(s)	33, 416
StyD4I	CCNGG	4 cut(s)	86, 91, 355, 520
StyI	CCWWGG	4 cut(s)	151, 205, 223, 241
TauI	GCSGC	7 cut(s)	177, 329, 437, 440, 495, 498, 501
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	71, 428, 431, 440
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	458
XagI	CCTNNNNNAGG	5 cut(s)	132, 150, 168, 204, 222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 467
XspI	CTAG	2 cut(s)	33, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.