Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

27817699 .. 27820099

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1232200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGATGAAAACGAGGACAAACATGAGACTTCTGAGAAAGGACTCTTTTCATCGTTCGGTTCTGGATTTGGTTCCGGACATGGAGGACAGTATGTTAAACCATGCCCTCCACAAGGATATGGATACCCCCCACAGCCACAACAAACACAGTATTCATCATATTCATACTCCTCTTCAGGCGGGAACTCTCCAACTGGATATCCTTACTCTGGAGGGTATCAACAGGCCTCCTACGCTGGTGGATATCCGCCAGCCGGTGGTTATTCATCAGGTTTAACAACTTCATATCATTCTGAAGCGCATGAAACATCTAGCATGGGAATGGGAGGGATGTTAGCTGGTGGAGGTGGTGCTGGTGGATCTGCTGCGTATGGGGCTAATCATCTTATGCATGGGGTTGGGGGCCATGGCTATGGAGGTTCCCACGGCATGTTAGCTGGTGGTGGTGGTGCTGCTACTGGGGCTAATCATCTTATGCATGGGGGTGGGGCTCATGGTTATGGAGGTTCCCACGGCTATGGATGTCCCCACGGCTATGGAGGTTCCCACGGCTATGGGGGTTCCCACGGTTATGGAGGTTCCCATGGCTATGGTTATGGCAGGTCCATTGACAGGTCCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

20.5

Weight (kDa)

6.44

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	2 cut(s)	183, 251
AclWI	GGATC	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	162, 318
AfiI	CCNNNNNNNGG	5 cut(s)	116, 212, 257, 260, 615
AluBI	AGCT	2 cut(s)	341, 440
AluI	AGCT	2 cut(s)	341, 440
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	2 cut(s)	228, 406
ApeKI	GCWGC	2 cut(s)	368, 455
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	406, 606, 618
AvaII	GGWCC	2 cut(s)	606, 618
BanII	GRGCYC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	355, 442
BceAI	ACGGC	4 cut(s)	445, 532, 550, 568
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	369, 456
BlsI	GCNGC	2 cut(s)	370, 457
Bme18I	GGWCC	2 cut(s)	606, 618
BmgT120I	GGNCC	3 cut(s)	406, 606, 618
BmiI	GGNNCC	7 cut(s)	76, 407, 424, 511, 547, 565, 583
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	234
BsaJI	CCNNGG	7 cut(s)	409, 427, 514, 532, 550, 568, 586
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 212, 257, 260, 615
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	202, 466
BseAI	TCCGGA	1 cut(s)	77
BseDI	CCNNGG	7 cut(s)	409, 427, 514, 532, 550, 568, 586
BseGI	GGATG	2 cut(s)	339, 530
BseLI	CCNNNNNNNGG	5 cut(s)	116, 212, 257, 260, 615
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	202, 466
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	355, 442
BshFI	GGCC	2 cut(s)	230, 408
BsiSI	CCGG	2 cut(s)	78, 258
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	5 cut(s)	116, 212, 257, 260, 615
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	230, 408
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	362
Bsp19I	CCATGG	2 cut(s)	409, 586
BspACI	CCGC	2 cut(s)	183, 251
BspANI	GGCC	2 cut(s)	230, 408
BspCNI	CTCAG	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	7 cut(s)	76, 407, 424, 511, 547, 565, 583
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	202, 466
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	7 cut(s)	409, 427, 514, 532, 550, 568, 586
BssMI	GATC	1 cut(s)	362
BssT1I	CCWWGG	2 cut(s)	409, 586
Bst4CI	ACNGT	3 cut(s)	93, 153, 572
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	7 cut(s)	409, 427, 514, 532, 550, 568, 586
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	339, 530
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 377, 464
BstNSI	RCATGY	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	355, 442
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	6 cut(s)	416, 521, 539, 557, 575, 593
BstYI	RGATCY	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	230, 408
BtgI	CCRYGG	7 cut(s)	409, 427, 514, 532, 550, 568, 586
BtsCI	GGATG	2 cut(s)	339, 530
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	406, 606, 618
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	409, 586
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	496
Eco32I	GATATC	2 cut(s)	203, 248
Eco47I	GGWCC	2 cut(s)	606, 618
Eco57I	CTGAAG	2 cut(s)	162, 318
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRV	GATATC	2 cut(s)	203, 248
EcoT14I	CCWWGG	2 cut(s)	409, 586
EcoT22I	ATGCAT	2 cut(s)	396, 483
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	2 cut(s)	409, 586
FaqI	GGGAC	1 cut(s)	513
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	369, 456
FokI	GGATG	2 cut(s)	346, 537
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	369, 456
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	369, 456
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	230, 408
HapII	CCGG	2 cut(s)	78, 258
HhaI	GCGC	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	78, 258
Hpy188I	TCNGA	2 cut(s)	37, 298
Hpy188III	TCNNGA	3 cut(s)	66, 78, 213
HpyCH4III	ACNGT	3 cut(s)	93, 153, 572
HpyCH4V	TGCA	2 cut(s)	394, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 377, 464
HpyF3I	CTNAG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	362
Lsp1109I	GCAGC	2 cut(s)	355, 442
MaeI	CTAG	1 cut(s)	315
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	218
Mph1103I	ATGCAT	2 cut(s)	396, 483
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	2 cut(s)	99, 278
MslI	CAYNNNNRTG	9 cut(s)	323, 414, 486, 501, 519, 537, 555, 573, 591
MspI	CCGG	2 cut(s)	78, 258
MwoI	GCNNNNNNNGC	3 cut(s)	236, 377, 464
NcoI	CCATGG	2 cut(s)	409, 586
NdeII	GATC	1 cut(s)	362
NlaIV	GGNNCC	7 cut(s)	76, 407, 424, 511, 547, 565, 583
NsiI	ATGCAT	2 cut(s)	396, 483
NspI	RCATGY	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	370, 457
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspN4I	GGNNCC	7 cut(s)	76, 407, 424, 511, 547, 565, 583
PspPI	GGNCC	3 cut(s)	406, 606, 618
PsuI	RGATCY	1 cut(s)	362
RseI	CAYNNNNRTG	9 cut(s)	323, 414, 486, 501, 519, 537, 555, 573, 591
SaqAI	TTAA	2 cut(s)	99, 278
SatI	GCNGC	2 cut(s)	369, 456
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	3 cut(s)	406, 606, 618
SchI	GAGTC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	496
SinI	GGWCC	2 cut(s)	606, 618
SmiMI	CAYNNNNRTG	9 cut(s)	323, 414, 486, 501, 519, 537, 555, 573, 591
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	183, 251
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	409, 586
TaaI	ACNGT	3 cut(s)	93, 153, 572
Tru1I	TTAA	2 cut(s)	99, 278
Tru9I	TTAA	2 cut(s)	99, 278
TseI	GCWGC	2 cut(s)	368, 455
TspDTI	ATGAA	7 cut(s)	24, 42, 147, 156, 258, 276, 321
TspGWI	ACGGA	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	606, 618
XagI	CCTNNNNNAGG	1 cut(s)	114
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	2 cut(s)	396, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.