Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001400.1

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

178593 .. 179848

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001400.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgggaggtggaaaagacaaaaataatgatactactgacagagggctactctcaagtcttgctggatttgctgctggacacaagccgcgccctggatcacattctcatcaaggacaaggatatcccccacaaggatatgcaccacctgggtaccctccttctggcgggtatcctccctctggcgggtatcctccctctgacggttaccctccctctggcggataccctccttcagatggctaccctcctcaaagtgggtatcccccatctggaaatcctcctcctatgggatatccaccagccggctatcccgcccctagtggatatccaccagccagctatcctgcccctagtggatatccaccagccggctatcctgcccctagcggatatccaccagctggttatccaggtccatcagctccacataaatcagggcatggatccggtatgggaatgggagctatgttagccggcggtgctgctgcggccgctgcaggttatggggttcaccatcttgtgcatggtagtagtcatggaagtggttcccatggctttggttttgggggtcaccatggctttggtcatgggaaatttggaaagcatcatggggggaagttcaagcatgggaaatttggaaagcatcatgggggaaagttcaagaaatggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

22.31

Weight (kDa)

9.66

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccII	CGCG	1 cut(s)	88
AciI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 387, 477, 488, 492
AclWI	GGATC	3 cut(s)	103, 438, 451
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	593, 632
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	622, 661
AjnI	CCWGG	3 cut(s)	91, 145, 409
AluBI	AGCT	4 cut(s)	339, 401, 422, 464
AluI	AGCT	4 cut(s)	339, 401, 422, 464
AlwI	GGATC	3 cut(s)	103, 438, 451
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	71, 482, 485, 494
ApoI	RAATTY	2 cut(s)	593, 632
Asp700I	GAANNNNTTC	1 cut(s)	544
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	503, 563
AvaII	GGWCC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BamHI	GGATCC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	58, 469, 472, 481
BccI	CCATC	4 cut(s)	230, 274, 424, 522
BciT130I	CCWGG	3 cut(s)	93, 147, 411
BciVI	GTATCC	4 cut(s)	180, 198, 215, 270
BfaI	CTAG	3 cut(s)	318, 351, 384
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	488
BfuI	GTATCC	4 cut(s)	180, 198, 215, 270
BisI	GCNGC	7 cut(s)	72, 86, 483, 486, 489, 492, 495
BlsI	GCNGC	7 cut(s)	73, 87, 484, 487, 490, 493, 496
Bme1390I	CCNGG	3 cut(s)	93, 147, 411
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	152, 445, 547
BmrFI	CCNGG	3 cut(s)	93, 147, 411
BmsI	GCATC	2 cut(s)	613, 652
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	91, 146, 550, 574
BsaWI	WCCGGW	1 cut(s)	446
Bse118I	RCCGGY	3 cut(s)	302, 368, 473
BseBI	CCWGG	3 cut(s)	93, 147, 411
BseDI	CCNNGG	4 cut(s)	91, 146, 550, 574
BseRI	GAGGAG	2 cut(s)	237, 270
BseX3I	CGGCCG	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	58, 469, 472, 481
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	303, 369, 447, 474
BsnI	GGCC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	95, 443
Bsp19I	CCATGG	2 cut(s)	550, 574
BspACI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 387, 477, 488, 492
BspANI	GGCC	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	152, 445, 547
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	3 cut(s)	103, 438, 451
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	3 cut(s)	302, 368, 473
BssAI	RCCGGY	3 cut(s)	302, 368, 473
BssECI	CCNNGG	4 cut(s)	91, 146, 550, 574
BssMI	GATC	2 cut(s)	95, 443
BssT1I	CCWWGG	2 cut(s)	550, 574
Bst2UI	CCWGG	3 cut(s)	93, 147, 411
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	304, 337, 370, 475
BstDSI	CCRYGG	2 cut(s)	550, 574
BstEII	GGTNACC	2 cut(s)	203, 569
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	98, 446
BstMBI	GATC	2 cut(s)	95, 443
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 470, 479, 488, 491, 494
BstNI	CCWGG	3 cut(s)	93, 147, 411
BstPI	GGTNACC	2 cut(s)	203, 569
BstSCI	CCNGG	3 cut(s)	91, 145, 409
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	58, 469, 472, 481
BstX2I	RGATCY	1 cut(s)	443
BstXI	CCANNNNNNTGG	2 cut(s)	557, 581
BstYI	RGATCY	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	489
BsuI	GTATCC	4 cut(s)	180, 198, 215, 270
BsuRI	GGCC	1 cut(s)	491
BtgI	CCRYGG	2 cut(s)	550, 574
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	4 cut(s)	304, 337, 370, 475
CciNI	GCGGCCGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	3 cut(s)	302, 368, 473
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	9 cut(s)	440, 524, 536, 551, 575, 587, 608, 626, 647
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	97, 445
DpnII	GATC	2 cut(s)	95, 443
EaeI	YGGCCR	1 cut(s)	489
EagI	CGGCCG	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	550, 574
Eco32I	GATATC	5 cut(s)	122, 293, 326, 359, 392
Eco47I	GGWCC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	2 cut(s)	203, 569
EcoO65I	GGTNACC	2 cut(s)	203, 569
EcoRII	CCWGG	3 cut(s)	91, 145, 409
EcoRV	GATATC	5 cut(s)	122, 293, 326, 359, 392
EcoT14I	CCWWGG	2 cut(s)	550, 574
ErhI	CCWWGG	2 cut(s)	550, 574
FaeI	CATG	9 cut(s)	443, 527, 539, 554, 578, 590, 611, 629, 650
FatI	CATG	9 cut(s)	439, 523, 535, 550, 574, 586, 607, 625, 646
FauI	CCCGC	3 cut(s)	158, 176, 319
Fnu4HI	GCNGC	7 cut(s)	72, 86, 483, 486, 489, 492, 495
Fsp4HI	GCNGC	7 cut(s)	72, 86, 483, 486, 489, 492, 495
FspBI	CTAG	3 cut(s)	318, 351, 384
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	7 cut(s)	72, 86, 483, 486, 489, 492, 495
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	4 cut(s)	303, 369, 447, 474
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	9 cut(s)	443, 527, 539, 554, 578, 590, 611, 629, 650
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	4 cut(s)	303, 369, 447, 474
HphI	GGTGA	2 cut(s)	503, 563
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	199, 235
Hpy188III	TCNNGA	2 cut(s)	270, 661
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	168, 240
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	140, 497, 523
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 470, 479, 488, 491, 494
Hsp92II	CATG	9 cut(s)	443, 527, 539, 554, 578, 590, 611, 629, 650
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	154
KroI	GCCGGC	3 cut(s)	302, 368, 473
KroNI	GCCGGC	3 cut(s)	304, 370, 475
Kzo9I	GATC	2 cut(s)	95, 443
LmnI	GCTCC	2 cut(s)	427, 461
Lsp1109I	GCAGC	4 cut(s)	58, 469, 472, 481
LweI	GCATC	2 cut(s)	613, 652
MaeI	CTAG	3 cut(s)	318, 351, 384
MaeIII	GTNAC	2 cut(s)	203, 569
MalI	GATC	2 cut(s)	97, 445
MboI	GATC	2 cut(s)	95, 443
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	2 cut(s)	593, 632
MroNI	GCCGGC	3 cut(s)	302, 368, 473
MroXI	GAANNNNTTC	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	2 cut(s)	401, 494
MspI	CCGG	4 cut(s)	303, 369, 447, 474
MspR9I	CCNGG	3 cut(s)	93, 147, 411
MvaI	CCWGG	3 cut(s)	93, 147, 411
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	6 cut(s)	68, 470, 479, 488, 491, 494
NaeI	GCCGGC	3 cut(s)	304, 370, 475
NcoI	CCATGG	2 cut(s)	550, 574
NdeII	GATC	2 cut(s)	95, 443
NgoMIV	GCCGGC	3 cut(s)	302, 368, 473
NlaIII	CATG	9 cut(s)	443, 527, 539, 554, 578, 590, 611, 629, 650
NlaIV	GGNNCC	3 cut(s)	152, 445, 547
NmuCI	GTSAC	1 cut(s)	569
NotI	GCGGCCGC	1 cut(s)	489
PdiI	GCCGGC	3 cut(s)	304, 370, 475
PdmI	GAANNNNTTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	7 cut(s)	73, 87, 484, 487, 490, 493, 496
Psp6I	CCWGG	3 cut(s)	91, 145, 409
PspEI	GGTNACC	2 cut(s)	203, 569
PspGI	CCWGG	3 cut(s)	91, 145, 409
PspN4I	GGNNCC	3 cut(s)	152, 445, 547
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	540
SatI	GCNGC	7 cut(s)	72, 86, 483, 486, 489, 492, 495
Sau3AI	GATC	2 cut(s)	95, 443
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	3 cut(s)	93, 147, 411
SetI	ASST	8 cut(s)	10, 148, 341, 403, 415, 424, 466, 502
SfaNI	GCATC	2 cut(s)	613, 652
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	593, 632
SsiI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 387, 477, 488, 492
SspMI	CTAG	3 cut(s)	318, 351, 384
StyD4I	CCNGG	3 cut(s)	91, 145, 409
StyI	CCWWGG	2 cut(s)	550, 574
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	2 cut(s)	593, 632
TauI	GCSGC	3 cut(s)	88, 491, 494
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	4 cut(s)	71, 482, 485, 494
Tsp45I	GTSAC	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	593, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	544
XspI	CTAG	3 cut(s)	318, 351, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.