Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

35098451 .. 35100841

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGAGGTGGAAAAGACGAAAATAATGATACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAGGCCGCGCCCTGGATCACATTCTCATCAAGGACACGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGCGGGTATCCTCCCTCTGACGGTTACCCTCCCTCTGGCGGATACCCTCCTTCAGATGGCTACGCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCCCCTATGGGATATCCACCAGCCGGCTATCCCGCCCCTAGTGGATATCCACCAGCCGGCCATCCTGCTCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGATGGAGGAACTATTTGTAAGAGAGGTGAGGCATTTCCAGAAAAGAGAGAAACAACTAAATTGGCAAATGGTGATGTTGTCCGGAAATCATGCATTGAGTGTATCCGATACAAAACAAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

17.38

Weight (kDa)

8.71

Isoelectric Point (pI)

66.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	5 cut(s)	86, 165, 201, 294, 336
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	152
AjnI	CCWGG	3 cut(s)	91, 145, 358
AluBI	AGCT	2 cut(s)	350, 371
AluI	AGCT	2 cut(s)	350, 371
AlwI	GGATC	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	2 cut(s)	83, 319
ApeKI	GCWGC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	422, 467
AvaII	GGWCC	1 cut(s)	362
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	212, 256, 330, 373, 380
BciT130I	CCWGG	3 cut(s)	93, 147, 360
BciVI	GTATCC	4 cut(s)	180, 197, 252, 497
BfaI	CTAG	2 cut(s)	300, 333
BfuI	GTATCC	4 cut(s)	180, 197, 252, 497
BisI	GCNGC	2 cut(s)	72, 86
BlsI	GCNGC	2 cut(s)	73, 87
Bme1390I	CCNGG	3 cut(s)	93, 147, 360
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	3 cut(s)	93, 147, 360
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	91, 146
BsaWI	WCCGGW	1 cut(s)	465
Bse118I	RCCGGY	2 cut(s)	284, 317
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	93, 147, 360
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	91, 146
BseGI	GGATG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	85, 321
BshNI	GGYRCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	285, 318, 466
BsnI	GGCC	2 cut(s)	85, 321
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	5 cut(s)	86, 165, 201, 294, 336
BspANI	GGCC	2 cut(s)	85, 321
BspDI	ATCGAT	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	2 cut(s)	284, 317
BssAI	RCCGGY	2 cut(s)	284, 317
BssECI	CCNNGG	2 cut(s)	91, 146
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	3 cut(s)	93, 147, 360
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	286, 319
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	3 cut(s)	93, 147, 360
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	91, 145, 358
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	505
BsuI	GTATCC	4 cut(s)	180, 197, 252, 497
BsuRI	GGCC	2 cut(s)	85, 321
BsuTUI	ATCGAT	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	286, 319
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	284, 317
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	474
CviJI	RGCY	9 cut(s)	46, 85, 222, 284, 288, 317, 321, 350, 371
CviKI_1	RGCY	9 cut(s)	46, 85, 222, 284, 288, 317, 321, 350, 371
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	216
Eco32I	GATATC	4 cut(s)	122, 275, 308, 341
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	91, 145, 358
EcoRV	GATATC	4 cut(s)	122, 275, 308, 341
EcoT22I	ATGCAT	1 cut(s)	479
FaeI	CATG	1 cut(s)	477
FaiI	YATR	4 cut(s)	138, 269, 378, 475
FatI	CATG	1 cut(s)	473
FauI	CCCGC	2 cut(s)	158, 301
Fnu4HI	GCNGC	2 cut(s)	72, 86
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	72, 86
FspBI	CTAG	2 cut(s)	300, 333
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	72, 86
HaeIII	GGCC	2 cut(s)	85, 321
HapII	CCGG	3 cut(s)	285, 318, 466
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	285, 318, 466
HphI	GGTGA	2 cut(s)	422, 467
Hpy188I	TCNGA	4 cut(s)	181, 217, 385, 491
Hpy188III	TCNNGA	3 cut(s)	252, 422, 466
HpyAV	CCTTC	2 cut(s)	168, 222
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	140, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	477
HspAI	GCGC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	465
KpnI	GGTACC	1 cut(s)	154
KroI	GCCGGC	2 cut(s)	284, 317
KroNI	GCCGGC	2 cut(s)	286, 319
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	3 cut(s)	232, 334, 376
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	300, 333
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MluCI	AATT	1 cut(s)	443
Mph1103I	ATGCAT	1 cut(s)	479
MroI	TCCGGA	1 cut(s)	465
MroNI	GCCGGC	2 cut(s)	284, 317
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	3 cut(s)	285, 318, 466
MspR9I	CCNGG	3 cut(s)	93, 147, 360
MvaI	CCWGG	3 cut(s)	93, 147, 360
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	68
NaeI	GCCGGC	2 cut(s)	286, 319
NdeII	GATC	1 cut(s)	95
NgoMIV	GCCGGC	2 cut(s)	284, 317
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	479
PdiI	GCCGGC	2 cut(s)	286, 319
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	73, 87
Psp6I	CCWGG	3 cut(s)	91, 145, 358
PspEI	GGTNACC	1 cut(s)	185
PspGI	CCWGG	3 cut(s)	91, 145, 358
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	2 cut(s)	72, 86
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	93, 147, 360
SetI	ASST	6 cut(s)	10, 148, 352, 364, 373, 412
SinI	GGWCC	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	5 cut(s)	86, 165, 201, 294, 336
SspMI	CTAG	2 cut(s)	300, 333
StyD4I	CCNGG	3 cut(s)	91, 145, 358
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	505
TasI	AATT	1 cut(s)	443
TauI	GCSGC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	362
XspI	CTAG	2 cut(s)	300, 333
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.