Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

16432624 .. 16435004

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGACGGTGGAAGAGACAACAAAGATGAGTCTAATGACAAAGGGCTATTTTCACAACTTGCTGGATATGCTGCTGGACACTACCCACAGCATGGATCATACCCTCCACAAGGATATGGATATCCTCCACAAGCACATGGACCACCTGGGTACCCTCCCCCTGGTGGGTATCCTCCTCCAGGTGGGTACCCTCCTGCAGGCGGGTATCCTCCATCTGGATATCCTCCCCCTGGGGGATATCCACCATCTGCCTATCCTGCCCCTGGTGGATATCCACCAGCCGGATATCCACCAGCCGGATATCCAGGTTCATCATCTCACCATTCAGGGCATGGACCTAATATGGGAGGGATGCTAGCTGGGGGTGCTGCAGCTGCAGCTGTTGCTTATGGGGCTCACCATCTTGTGCACGGGGGTCACCACGGCTATGGTTATGGGGGTCACCACGGCTACGGTCATGGGAAGTTCAAACACGGTCATGGTCATGGGAAGTTCAAACATGGCAAATTCAAGCATGGGAAATTTGGCAAGCGCTTTGGCTTTGGGGGCAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

19.38

Weight (kDa)

9.64

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	150, 186
AccB1I	GGYRCC	2 cut(s)	150, 186
AccB7I	CCANNNNNTGG	1 cut(s)	92
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	506, 521
AfaI	GTAC	2 cut(s)	152, 188
AfeI	AGCGCT	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	469, 496, 511, 556
AjnI	CCWGG	6 cut(s)	145, 160, 178, 229, 262, 304
AluBI	AGCT	3 cut(s)	359, 374, 380
AluI	AGCT	3 cut(s)	359, 374, 380
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	103
Aor51HI	AGCGCT	1 cut(s)	533
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	5 cut(s)	71, 368, 371, 374, 377
ApoI	RAATTY	2 cut(s)	506, 521
Asp718I	GGTACC	2 cut(s)	150, 186
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	140, 335
AsuHPI	GGTGA	4 cut(s)	311, 389, 410, 434
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	140, 335
BaeGI	GKGCMC	1 cut(s)	411
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	2 cut(s)	150, 186
BanII	GRGCYC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	58, 355, 361, 383, 389
BccI	CCATC	3 cut(s)	220, 253, 408
BceAI	ACGGC	2 cut(s)	439, 463
BciT130I	CCWGG	6 cut(s)	147, 162, 180, 231, 264, 306
BciVI	GTATCC	2 cut(s)	180, 216
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	3 cut(s)	195, 369, 375
BfoI	RGCGCY	1 cut(s)	535
BfuI	GTATCC	2 cut(s)	180, 216
BisI	GCNGC	5 cut(s)	72, 369, 372, 375, 378
BlsI	GCNGC	5 cut(s)	73, 370, 373, 376, 379
Bme1390I	CCNGG	6 cut(s)	147, 162, 180, 231, 264, 306
Bme18I	GGWCC	2 cut(s)	140, 335
BmgT120I	GGNCC	2 cut(s)	140, 335
BmiI	GGNNCC	2 cut(s)	152, 188
BmrFI	CCNGG	6 cut(s)	147, 162, 180, 231, 264, 306
BmsI	GCATC	1 cut(s)	342
BmtI	GCTAGC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	7 cut(s)	146, 160, 229, 230, 262, 421, 445
BseBI	CCWGG	6 cut(s)	147, 162, 180, 231, 264, 306
BseDI	CCNNGG	7 cut(s)	146, 160, 229, 230, 262, 421, 445
BseGI	GGATG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	5 cut(s)	58, 355, 361, 383, 389
BseYI	CCCAGC	1 cut(s)	359
BshNI	GGYRCC	2 cut(s)	150, 186
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	282, 297
BsmAI	GTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	397, 411
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	152, 188
BspMAI	CTGCAG	3 cut(s)	199, 373, 379
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	2 cut(s)	150, 186
BssECI	CCNNGG	7 cut(s)	146, 160, 229, 230, 262, 421, 445
BssMI	GATC	1 cut(s)	95
Bst2UI	CCWGG	6 cut(s)	147, 162, 180, 231, 264, 306
Bst4CI	ACNGT	3 cut(s)	8, 455, 476
Bst6I	CTCTTC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	199, 357, 530
BstDSI	CCRYGG	2 cut(s)	421, 445
BstEII	GGTNACC	2 cut(s)	416, 440
BstENI	CCTNNNNNAGG	3 cut(s)	108, 177, 195
BstF5I	GGATG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 257, 365, 374, 377, 383, 392, 546
BstNI	CCWGG	6 cut(s)	147, 162, 180, 231, 264, 306
BstPI	GGTNACC	2 cut(s)	416, 440
BstSCI	CCNGG	6 cut(s)	145, 160, 178, 229, 262, 304
BstSFI	CTRYAG	3 cut(s)	195, 369, 375
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	5 cut(s)	58, 355, 361, 383, 389
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuI	GTATCC	2 cut(s)	180, 216
BtgI	CCRYGG	2 cut(s)	421, 445
BtsCI	GGATG	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	199, 357, 530
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	140, 335
Csp6I	GTAC	2 cut(s)	151, 187
CviAII	CATG	8 cut(s)	92, 137, 332, 458, 479, 485, 500, 515
CviQI	GTAC	2 cut(s)	151, 187
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	397
Eco32I	GATATC	6 cut(s)	122, 221, 239, 272, 287, 302
Eco47I	GGWCC	2 cut(s)	140, 335
Eco47III	AGCGCT	1 cut(s)	533
Eco91I	GGTNACC	2 cut(s)	416, 440
EcoNI	CCTNNNNNAGG	3 cut(s)	108, 177, 195
EcoO65I	GGTNACC	2 cut(s)	416, 440
EcoRII	CCWGG	6 cut(s)	145, 160, 178, 229, 262, 304
EcoRV	GATATC	6 cut(s)	122, 221, 239, 272, 287, 302
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	8 cut(s)	95, 140, 335, 461, 482, 488, 503, 518
FatI	CATG	8 cut(s)	91, 136, 331, 457, 478, 484, 499, 514
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	72, 369, 372, 375, 378
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	72, 369, 372, 375, 378
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	5 cut(s)	72, 369, 372, 375, 378
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	535
HapII	CCGG	2 cut(s)	282, 297
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	8 cut(s)	95, 140, 335, 461, 482, 488, 503, 518
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	282, 297
HphI	GGTGA	4 cut(s)	311, 389, 410, 434
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188III	TCNNGA	2 cut(s)	216, 556
Hpy8I	GTNNAC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	8, 455, 476
HpyCH4V	TGCA	4 cut(s)	197, 371, 377, 409
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 257, 365, 374, 377, 383, 392, 546
Hsp92II	CATG	8 cut(s)	95, 140, 335, 461, 482, 488, 503, 518
HspAI	GCGC	1 cut(s)	532
KpnI	GGTACC	2 cut(s)	154, 190
Kzo9I	GATC	1 cut(s)	95
Lsp1109I	GCAGC	5 cut(s)	58, 355, 361, 383, 389
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	416, 440
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	397, 411
MluCI	AATT	2 cut(s)	506, 521
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	114, 135, 165, 183, 186, 201, 219, 234, 341
MslI	CAYNNNNRTG	3 cut(s)	426, 477, 483
MspA1I	CMGCKG	2 cut(s)	374, 380
MspI	CCGG	2 cut(s)	282, 297
MspR9I	CCNGG	6 cut(s)	147, 162, 180, 231, 264, 306
MvaI	CCWGG	6 cut(s)	147, 162, 180, 231, 264, 306
MwoI	GCNNNNNNNGC	8 cut(s)	68, 257, 365, 374, 377, 383, 392, 546
NdeII	GATC	1 cut(s)	95
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	8 cut(s)	95, 140, 335, 461, 482, 488, 503, 518
NlaIV	GGNNCC	2 cut(s)	152, 188
NmuCI	GTSAC	2 cut(s)	416, 440
PasI	CCCWGGG	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	73, 370, 373, 376, 379
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	6 cut(s)	145, 160, 178, 229, 262, 304
PspEI	GGTNACC	2 cut(s)	416, 440
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	6 cut(s)	145, 160, 178, 229, 262, 304
PspN4I	GGNNCC	2 cut(s)	152, 188
PspPI	GGNCC	2 cut(s)	140, 335
PstI	CTGCAG	3 cut(s)	199, 373, 379
PvuII	CAGCTG	2 cut(s)	374, 380
RsaI	GTAC	2 cut(s)	152, 188
RsaNI	GTAC	2 cut(s)	151, 187
RseI	CAYNNNNRTG	3 cut(s)	426, 477, 483
SatI	GCNGC	5 cut(s)	72, 369, 372, 375, 378
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	2 cut(s)	140, 335
SbfI	CCTGCAGG	1 cut(s)	199
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	6 cut(s)	147, 162, 180, 231, 264, 306
SdaI	CCTGCAGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	397, 411
SetI	ASST	7 cut(s)	148, 184, 310, 340, 361, 376, 382
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	3 cut(s)	195, 369, 375
SinI	GGWCC	2 cut(s)	140, 335
SmiMI	CAYNNNNRTG	3 cut(s)	426, 477, 483
Sse8387I	CCTGCAGG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	506, 521
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	6 cut(s)	145, 160, 178, 229, 262, 304
TaaI	ACNGT	3 cut(s)	8, 455, 476
TasI	AATT	2 cut(s)	506, 521
TseFI	GTSAC	2 cut(s)	416, 440
TseI	GCWGC	5 cut(s)	71, 368, 371, 374, 377
Tsp45I	GTSAC	2 cut(s)	416, 440
TspDTI	ATGAA	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	140, 335
XagI	CCTNNNNNAGG	3 cut(s)	108, 177, 195
XapI	RAATTY	2 cut(s)	506, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.