Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

16437067 .. 16439238

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAGGTGGAAAGGACAAACAACATGAGTCTACTGACAAAGGGTTATTTTCATTTGATGGTGGATTTGGTGCTGGACACTATCCTGGATCATACCCTCCGCAAGGATATGGATATCCCCCACAAGCACATCATGGATATCCTTCCTCCGGTGGGTATCCTCCACCTGGATATCCTTCCAATGGGGGATATCCACCAGCCGTCTATCCAAGTGGATATCCCCCAGCCGGTTATCCAGGTCACCCAGGTCCATATCATTCAGGATATGGATCTAGCATGGGACTGGGAGGGGTGTTAGCTGGGGGTGTTGCTGCATACGGGGCCAACCATCTTGCGCATGGGCGCCATAGCCCTGGATATGGTTACGGGGGTTACCAGGGCTATGGGGGTTCTCATGGGAAGTTCAAACATGGGAAATTTAAGGGAAAGGGGTATGGCAAGCCCTTTGGGGGCAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.13

Weight (kDa)

9.59

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	2 cut(s)	97, 277
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	343
AfiI	CCNNNNNNNGG	8 cut(s)	104, 149, 153, 167, 182, 227, 359, 449
AgsI	TTSAA	2 cut(s)	406, 460
AjnI	CCWGG	6 cut(s)	85, 166, 235, 244, 352, 375
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AlwI	GGATC	2 cut(s)	97, 277
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	337, 345
AspS9I	GGNCC	2 cut(s)	248, 321
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	53, 336
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	6 cut(s)	87, 168, 237, 246, 354, 377
BciVI	GTATCC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	6 cut(s)	87, 168, 237, 246, 354, 377
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 321
BmiI	GGNNCC	2 cut(s)	322, 344
BmrFI	CCNGG	6 cut(s)	87, 168, 237, 246, 354, 377
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	244, 352, 376
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	8 cut(s)	104, 149, 153, 167, 182, 227, 359, 449
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	6 cut(s)	87, 168, 237, 246, 354, 377
BseDI	CCNNGG	3 cut(s)	244, 352, 376
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	8 cut(s)	104, 149, 153, 167, 182, 227, 359, 449
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	2 cut(s)	223, 299
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	150, 228
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	8 cut(s)	104, 149, 153, 167, 182, 227, 359, 449
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	89, 269
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	322, 344
BspPI	GGATC	2 cut(s)	97, 277
BspT107I	GGYRCC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	244, 352, 376
BssMI	GATC	2 cut(s)	89, 269
BssNI	GRCGYC	1 cut(s)	343
Bst2UI	CCWGG	6 cut(s)	87, 168, 237, 246, 354, 377
BstACI	GRCGYC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	440
BstEII	GGTNACC	2 cut(s)	239, 371
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	337, 345
BstKTI	GATC	2 cut(s)	92, 272
BstMBI	GATC	2 cut(s)	89, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	6 cut(s)	87, 168, 237, 246, 354, 377
BstPI	GGTNACC	2 cut(s)	239, 371
BstSCI	CCNGG	6 cut(s)	85, 166, 235, 244, 352, 375
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	2 cut(s)	353, 383
BstYI	RGATCY	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	2 cut(s)	337, 345
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	248, 321
CviAII	CATG	6 cut(s)	26, 134, 277, 338, 395, 410
CviJI	RGCY	7 cut(s)	200, 227, 299, 323, 351, 381, 442
CviKI_1	RGCY	7 cut(s)	200, 227, 299, 323, 351, 381, 442
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	2 cut(s)	91, 271
DpnII	GATC	2 cut(s)	89, 269
Eco32I	GATATC	5 cut(s)	116, 140, 173, 191, 218
Eco47I	GGWCC	1 cut(s)	248
Eco91I	GGTNACC	2 cut(s)	239, 371
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoO65I	GGTNACC	2 cut(s)	239, 371
EcoRII	CCWGG	6 cut(s)	85, 166, 235, 244, 352, 375
EcoRV	GATATC	5 cut(s)	116, 140, 173, 191, 218
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
FaeI	CATG	6 cut(s)	29, 137, 280, 341, 398, 413
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	6 cut(s)	25, 133, 276, 337, 394, 409
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	273
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	2 cut(s)	336, 344
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	2 cut(s)	227, 303
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	150, 228
HhaI	GCGC	2 cut(s)	337, 345
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	29, 137, 280, 341, 398, 413
Hin6I	GCGC	2 cut(s)	335, 343
HinP1I	GCGC	2 cut(s)	335, 343
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	150, 228
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	261, 460
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	153, 186
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	6 cut(s)	29, 137, 280, 341, 398, 413
HspAI	GCGC	2 cut(s)	335, 343
KasI	GGCGCC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	89, 269
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	239, 362, 371
MalI	GATC	2 cut(s)	91, 271
MboI	GATC	2 cut(s)	89, 269
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	1 cut(s)	416
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	108, 157, 171, 281
MseI	TTAA	1 cut(s)	420
MspI	CCGG	2 cut(s)	150, 228
MspR9I	CCNGG	6 cut(s)	87, 168, 237, 246, 354, 377
MvaI	CCWGG	6 cut(s)	87, 168, 237, 246, 354, 377
MwoI	GCNNNNNNNGC	1 cut(s)	320
NarI	GGCGCC	1 cut(s)	343
NdeII	GATC	2 cut(s)	89, 269
NlaIII	CATG	6 cut(s)	29, 137, 280, 341, 398, 413
NlaIV	GGNNCC	2 cut(s)	322, 344
NmuCI	GTSAC	1 cut(s)	239
NsbI	TGCGCA	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	37
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	6 cut(s)	85, 166, 235, 244, 352, 375
PspEI	GGTNACC	2 cut(s)	239, 371
PspFI	CCCAGC	2 cut(s)	223, 299
PspGI	CCWGG	6 cut(s)	85, 166, 235, 244, 352, 375
PspN4I	GGNNCC	2 cut(s)	322, 344
PspPI	GGNCC	2 cut(s)	248, 321
PsuI	RGATCY	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	89, 269
Sau96I	GGNCC	2 cut(s)	248, 321
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	6 cut(s)	87, 168, 237, 246, 354, 377
SetI	ASST	5 cut(s)	10, 169, 241, 250, 301
SfoI	GGCGCC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	6 cut(s)	85, 166, 235, 244, 352, 375
TasI	AATT	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.