Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

33038838 .. 33039900

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATAACAAAGACGATCCTAATGACAAAGACAAAGGGCTTTTTTCACATCTTGCTGGATATGCTGCTGGACACTACCCACAGCATGGAGGATCATACCCTCCACAAGGATATGGGTATCCCCCACAAGGATATGGATACCCTCCTGCAGGCGGGTATCCTCCTCAAGGCGGCTATCCTCCATCTGGATATCCTCCGCAGGGTGGGTATCCTCCGTCTGGATATCCTCCACAGGGTGGTTATCCTCCATCTGGATATCCTCCCCCTGGCGGATATCCACCAGCCGGGTATCCAGGTCCATCAGCTGCACATCATACAGGGCATGGTTCGAACATGGGAGGCCTGCTAGCTGGGGGTGCTGCTGCTGCAGCTGCTGCTTATGGGGCTCACCATCTTGTGCACGGAAGTCACCACGGGGGTTACCATGGCTATGGTCACGGGAAGTTCAAGCATGGCAAACATGGGTTTGGTCATGGGAAATTCAAGCATGGTAAACATGGGTTTGGCCATGGCAAATTTGGCAAGCGATTTGGGTTTGGAGGCAAGTTCAAGAAATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

19.28

Weight (kDa)

9.62

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 236
AciI	CCGC	4 cut(s)	153, 171, 197, 270
AclWI	GGATC	2 cut(s)	11, 100
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	479, 515
AdeI	CACNNNGTG	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	448, 484, 550
AjnI	CCWGG	2 cut(s)	265, 292
AluBI	AGCT	3 cut(s)	305, 350, 371
AluI	AGCT	3 cut(s)	305, 350, 371
Alw21I	GWGCWC	1 cut(s)	402
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	11, 100
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	340, 505
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	8 cut(s)	65, 305, 359, 362, 365, 368, 371, 374
ApoI	RAATTY	2 cut(s)	479, 515
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	380, 401
AsuII	TTCGAA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	8 cut(s)	52, 292, 346, 349, 352, 358, 361, 380
BccI	CCATC	4 cut(s)	190, 256, 307, 399
BciT130I	CCWGG	2 cut(s)	267, 294
BciVI	GTATCC	5 cut(s)	129, 131, 168, 219, 300
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	147, 366
BfuI	GTATCC	5 cut(s)	129, 131, 168, 219, 300
BisI	GCNGC	9 cut(s)	66, 172, 306, 360, 363, 366, 369, 372, 375
BlsI	GCNGC	9 cut(s)	67, 173, 307, 361, 364, 367, 370, 373, 376
Bme1390I	CCNGG	3 cut(s)	267, 286, 294
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	3 cut(s)	267, 286, 294
BmtI	GCTAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	265, 412, 424, 508
BseBI	CCWGG	2 cut(s)	267, 294
BseDI	CCNNGG	4 cut(s)	265, 412, 424, 508
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	8 cut(s)	52, 292, 346, 349, 352, 358, 361, 380
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	342, 507
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	285
BsnI	GGCC	2 cut(s)	342, 507
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	388, 402
Bsp143I	GATC	2 cut(s)	16, 92
Bsp19I	CCATGG	2 cut(s)	424, 508
BspACI	CCGC	4 cut(s)	153, 171, 197, 270
BspANI	GGCC	2 cut(s)	342, 507
BspMAI	CTGCAG	2 cut(s)	151, 370
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	11, 100
BspT104I	TTCGAA	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	265, 412, 424, 508
BssMI	GATC	2 cut(s)	16, 92
BssT1I	CCWWGG	2 cut(s)	424, 508
Bst2UI	CCWGG	2 cut(s)	267, 294
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	151, 344, 348, 524
BstDSI	CCRYGG	3 cut(s)	412, 424, 508
BstEII	GGTNACC	1 cut(s)	419
BstENI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
BstKTI	GATC	2 cut(s)	19, 95
BstMBI	GATC	2 cut(s)	16, 92
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 356, 365, 368, 371, 374, 383, 519
BstNI	CCWGG	2 cut(s)	267, 294
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	265, 284, 292
BstSFI	CTRYAG	2 cut(s)	147, 366
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	8 cut(s)	52, 292, 346, 349, 352, 358, 361, 380
BstXI	CCANNNNNNTGG	1 cut(s)	431
BsuI	GTATCC	5 cut(s)	129, 131, 168, 219, 300
BsuRI	GGCC	2 cut(s)	342, 507
BtgI	CCRYGG	3 cut(s)	412, 424, 508
Cac8I	GCNNGC	4 cut(s)	151, 344, 348, 524
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	296
DpnI	GATC	2 cut(s)	18, 94
DpnII	GATC	2 cut(s)	16, 92
DraIII	CACNNNGTG	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	424, 508
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	388
Eco32I	GATATC	4 cut(s)	191, 224, 257, 275
Eco47I	GGWCC	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	419
EcoNI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
EcoO65I	GGTNACC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	265, 292
EcoRV	GATATC	4 cut(s)	191, 224, 257, 275
EcoT14I	CCWWGG	2 cut(s)	424, 508
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	424, 508
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	9 cut(s)	66, 172, 306, 360, 363, 366, 369, 372, 375
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	9 cut(s)	66, 172, 306, 360, 363, 366, 369, 372, 375
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	9 cut(s)	66, 172, 306, 360, 363, 366, 369, 372, 375
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	342, 507
HapII	CCGG	1 cut(s)	285
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	380, 401
Hpy166II	GTNNAC	2 cut(s)	400, 494
Hpy188III	TCNNGA	4 cut(s)	186, 219, 252, 550
Hpy8I	GTNNAC	2 cut(s)	400, 494
HpyCH4V	TGCA	4 cut(s)	149, 308, 368, 400
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 356, 365, 368, 371, 374, 383, 519
Kzo9I	GATC	2 cut(s)	16, 92
Lsp1109I	GCAGC	8 cut(s)	52, 292, 346, 349, 352, 358, 361, 380
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	407, 419, 434
MalI	GATC	2 cut(s)	18, 94
MboI	GATC	2 cut(s)	16, 92
MhlI	GDGCHC	2 cut(s)	388, 402
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	2 cut(s)	479, 515
MluNI	TGGCCA	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	305, 371
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	267, 286, 294
MvaI	CCWGG	2 cut(s)	267, 294
MwoI	GCNNNNNNNGC	8 cut(s)	62, 356, 365, 368, 371, 374, 383, 519
NciI	CCSGG	1 cut(s)	286
NcoI	CCATGG	2 cut(s)	424, 508
NdeII	GATC	2 cut(s)	16, 92
NheI	GCTAGC	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	407, 434
NspV	TTCGAA	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	342
PflMI	CCANNNNNTGG	2 cut(s)	86, 236
PkrI	GCNGC	9 cut(s)	67, 173, 307, 361, 364, 367, 370, 373, 376
Psp6I	CCWGG	2 cut(s)	265, 292
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	265, 292
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	151, 370
PstNI	CAGNNNCTG	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	305, 371
RseI	CAYNNNNRTG	1 cut(s)	429
SatI	GCNGC	9 cut(s)	66, 172, 306, 360, 363, 366, 369, 372, 375
Sau3AI	GATC	2 cut(s)	16, 92
Sau96I	GGNCC	1 cut(s)	296
SbfI	CCTGCAGG	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	267, 286, 294
SdaI	CCTGCAGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	388, 402
SetI	ASST	4 cut(s)	298, 307, 352, 373
SfcI	CTRYAG	2 cut(s)	147, 366
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse8387I	CCTGCAGG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	479, 515
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	4 cut(s)	153, 171, 197, 270
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	265, 284, 292
StyI	CCWWGG	2 cut(s)	424, 508
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	479, 515
TauI	GCSGC	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	407, 434
TseI	GCWGC	8 cut(s)	65, 305, 359, 362, 365, 368, 371, 374
Tsp45I	GTSAC	2 cut(s)	407, 434
TspGWI	ACGGA	2 cut(s)	204, 417
Van91I	CCANNNNNTGG	2 cut(s)	86, 236
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	296
XagI	CCTNNNNNAGG	3 cut(s)	105, 147, 165
XapI	RAATTY	2 cut(s)	479, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.