Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013921.1

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Reverse (-)

7184 .. 8901

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013921.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgggaggtggaaaagacaaaaataatgatactactgacagagggctactctcaagtctagctggatttgctgctggacacaagccgcgccctggatcacattctcatcaaggacaaggatatcccccacaaggatatgcaccacctgggtaccctccttctggcgggtatcctccctctggcgggtatcctccctctgacggttaccctccctctggcggataccctccttcagatggctaccctcctcaaagtgggtatcccccatctggaaatcctcctcctatgggatatccaccagccggctatcccgcccctagtggatatccaccagccagctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagtggatatccaccagccggctatcctgcccctagcggatatccaccagctggttatccaggtccatcagctccacataaatcagggcatggatccggtatgggaatgggagctatgttagccggcggtgctgctgcggccgctgcaggttatggggttcaccatcttgtgcatggtagtagtcatggaagtggttcccatggctttggttttgggggtcaccatggctttggtcatgggaaatttggaaagcatcatggggggaagttcaagcatgggaaatttggaaagcatcatgggggaaagttcaagaaatggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

37.12

Weight (kDa)

9.3

Isoelectric Point (pI)

69.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	950
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccII	CGCG	1 cut(s)	88
AciI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 849, 939, 950, 954
AclWI	GGATC	3 cut(s)	103, 900, 913
AcoI	YGGCCR	1 cut(s)	951
AcsI	RAATTY	2 cut(s)	1055, 1094
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	1084, 1123
AjnI	CCWGG	3 cut(s)	91, 145, 871
AluBI	AGCT	5 cut(s)	62, 339, 863, 884, 926
AluI	AGCT	5 cut(s)	62, 339, 863, 884, 926
AlwI	GGATC	3 cut(s)	103, 900, 913
AoxI	GGCC	1 cut(s)	951
ApeKI	GCWGC	4 cut(s)	71, 944, 947, 956
ApoI	RAATTY	2 cut(s)	1055, 1094
Asp700I	GAANNNNTTC	1 cut(s)	1006
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	875
AsuHPI	GGTGA	2 cut(s)	965, 1025
AvaII	GGWCC	1 cut(s)	875
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BamHI	GGATCC	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	58, 931, 934, 943
BccI	CCATC	4 cut(s)	230, 274, 886, 984
BciT130I	CCWGG	3 cut(s)	93, 147, 873
BciVI	GTATCC	4 cut(s)	180, 198, 215, 270
BfmI	CTRYAG	1 cut(s)	957
BfuAI	ACCTGC	1 cut(s)	950
BfuI	GTATCC	4 cut(s)	180, 198, 215, 270
BisI	GCNGC	7 cut(s)	72, 86, 945, 948, 951, 954, 957
BlsI	GCNGC	7 cut(s)	73, 87, 946, 949, 952, 955, 958
Bme1390I	CCNGG	3 cut(s)	93, 147, 873
Bme18I	GGWCC	1 cut(s)	875
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	3 cut(s)	152, 907, 1009
BmrFI	CCNGG	3 cut(s)	93, 147, 873
BmsI	GCATC	2 cut(s)	1075, 1114
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	91, 146, 1012, 1036
BsaWI	WCCGGW	1 cut(s)	908
BseBI	CCWGG	3 cut(s)	93, 147, 873
BseDI	CCNNGG	4 cut(s)	91, 146, 1012, 1036
BseRI	GAGGAG	2 cut(s)	237, 270
BseX3I	CGGCCG	1 cut(s)	951
BseXI	GCAGC	4 cut(s)	58, 931, 934, 943
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	954
BshFI	GGCC	1 cut(s)	953
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	954
BsnI	GGCC	1 cut(s)	953
Bsp143I	GATC	2 cut(s)	95, 905
Bsp19I	CCATGG	2 cut(s)	1012, 1036
BspACI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 849, 939, 950, 954
BspANI	GGCC	1 cut(s)	953
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	152, 907, 1009
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	3 cut(s)	103, 900, 913
BspT107I	GGYRCC	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	91, 146, 1012, 1036
BssMI	GATC	2 cut(s)	95, 905
BssT1I	CCWWGG	2 cut(s)	1012, 1036
Bst2UI	CCWGG	3 cut(s)	93, 147, 873
Bst4CI	ACNGT	1 cut(s)	203
BstDSI	CCRYGG	2 cut(s)	1012, 1036
BstEII	GGTNACC	2 cut(s)	203, 1031
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	98, 908
BstMBI	GATC	2 cut(s)	95, 905
BstMCI	CGRYCG	1 cut(s)	954
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 932, 941, 950, 953, 956
BstNI	CCWGG	3 cut(s)	93, 147, 873
BstPI	GGTNACC	2 cut(s)	203, 1031
BstSCI	CCNGG	3 cut(s)	91, 145, 871
BstSFI	CTRYAG	1 cut(s)	957
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	58, 931, 934, 943
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	2 cut(s)	1019, 1043
BstYI	RGATCY	1 cut(s)	905
BstZI	CGGCCG	1 cut(s)	951
BsuI	GTATCC	4 cut(s)	180, 198, 215, 270
BsuRI	GGCC	1 cut(s)	953
BtgI	CCRYGG	2 cut(s)	1012, 1036
BveI	ACCTGC	1 cut(s)	950
CciNI	GCGGCCGC	1 cut(s)	951
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	875
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	9 cut(s)	902, 986, 998, 1013, 1037, 1049, 1070, 1088, 1109
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	97, 907
DpnII	GATC	2 cut(s)	95, 905
EaeI	YGGCCR	1 cut(s)	951
EagI	CGGCCG	1 cut(s)	951
EciI	GGCGGA	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	951
Eco130I	CCWWGG	2 cut(s)	1012, 1036
Eco47I	GGWCC	1 cut(s)	875
Eco52I	CGGCCG	1 cut(s)	951
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	2 cut(s)	203, 1031
EcoO65I	GGTNACC	2 cut(s)	203, 1031
EcoRII	CCWGG	3 cut(s)	91, 145, 871
EcoT14I	CCWWGG	2 cut(s)	1012, 1036
ErhI	CCWWGG	2 cut(s)	1012, 1036
FaeI	CATG	9 cut(s)	905, 989, 1001, 1016, 1040, 1052, 1073, 1091, 1112
FatI	CATG	9 cut(s)	901, 985, 997, 1012, 1036, 1048, 1069, 1087, 1108
FauI	CCCGC	3 cut(s)	158, 176, 319
Fnu4HI	GCNGC	7 cut(s)	72, 86, 945, 948, 951, 954, 957
Fsp4HI	GCNGC	7 cut(s)	72, 86, 945, 948, 951, 954, 957
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	7 cut(s)	72, 86, 945, 948, 951, 954, 957
HaeIII	GGCC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	9 cut(s)	905, 989, 1001, 1016, 1040, 1052, 1073, 1091, 1112
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HphI	GGTGA	2 cut(s)	965, 1025
Hpy166II	GTNNAC	1 cut(s)	973
Hpy188I	TCNGA	2 cut(s)	199, 235
Hpy188III	TCNNGA	2 cut(s)	270, 1123
Hpy8I	GTNNAC	1 cut(s)	973
HpyAV	CCTTC	2 cut(s)	168, 240
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	140, 959, 985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 932, 941, 950, 953, 956
Hsp92II	CATG	9 cut(s)	905, 989, 1001, 1016, 1040, 1052, 1073, 1091, 1112
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	95, 905
LmnI	GCTCC	2 cut(s)	889, 923
Lsp1109I	GCAGC	4 cut(s)	58, 931, 934, 943
LweI	GCATC	2 cut(s)	1075, 1114
MaeIII	GTNAC	2 cut(s)	203, 1031
MalI	GATC	2 cut(s)	97, 907
MboI	GATC	2 cut(s)	95, 905
MflI	RGATCY	1 cut(s)	905
MluCI	AATT	2 cut(s)	1055, 1094
MroXI	GAANNNNTTC	1 cut(s)	1006
MslI	CAYNNNNRTG	1 cut(s)	1002
MspA1I	CMGCKG	2 cut(s)	863, 956
MspR9I	CCNGG	3 cut(s)	93, 147, 873
MvaI	CCWGG	3 cut(s)	93, 147, 873
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	6 cut(s)	68, 932, 941, 950, 953, 956
NcoI	CCATGG	2 cut(s)	1012, 1036
NdeII	GATC	2 cut(s)	95, 905
NlaIII	CATG	9 cut(s)	905, 989, 1001, 1016, 1040, 1052, 1073, 1091, 1112
NlaIV	GGNNCC	3 cut(s)	152, 907, 1009
NmuCI	GTSAC	1 cut(s)	1031
NotI	GCGGCCGC	1 cut(s)	951
PdmI	GAANNNNTTC	1 cut(s)	1006
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	7 cut(s)	73, 87, 946, 949, 952, 955, 958
Psp6I	CCWGG	3 cut(s)	91, 145, 871
PspEI	GGTNACC	2 cut(s)	203, 1031
PspGI	CCWGG	3 cut(s)	91, 145, 871
PspN4I	GGNNCC	3 cut(s)	152, 907, 1009
PspPI	GGNCC	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	961
PsuI	RGATCY	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	1002
SatI	GCNGC	7 cut(s)	72, 86, 945, 948, 951, 954, 957
Sau3AI	GATC	2 cut(s)	95, 905
Sau96I	GGNCC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	93, 147, 873
SetI	ASST	9 cut(s)	10, 64, 148, 341, 865, 877, 886, 928, 964
SfaNI	GCATC	2 cut(s)	1075, 1114
SfcI	CTRYAG	1 cut(s)	957
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	1055, 1094
SsiI	CCGC	9 cut(s)	86, 165, 183, 219, 312, 849, 939, 950, 954
StyD4I	CCNGG	3 cut(s)	91, 145, 871
StyI	CCWWGG	2 cut(s)	1012, 1036
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	2 cut(s)	1055, 1094
TauI	GCSGC	3 cut(s)	88, 953, 956
TseFI	GTSAC	1 cut(s)	1031
TseI	GCWGC	4 cut(s)	71, 944, 947, 956
Tsp45I	GTSAC	1 cut(s)	1031
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	2 cut(s)	1055, 1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.