Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002276

Physical Location & Seq

Genomic Coordinates Forward (+)

35045284 .. 35049800

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAGGTGGAAAAGACGAAAATAATGATACTACTGACAGAGGGCTACTCTCAAGTCTTGCTGGATTTGCTGCTGGACACAGGCCGCGCCCTGGATCACATTCTCATCAAGGACACGGATATCCCCCACAAGGATATGCACCACCTGGGTACCCTCCTTCTGGTGGGTATCCTCCCTCTGGCAGGTATCCTCCCTCTGGCGGGTATCCTCCCTCTGGCAGGTATCCTCCCTCTGGCGGGTATCCTCCCTCTGGCGGATACCCTCCTTCAGATGGCTACCCTCCTCAAAGTGGGTATCCCCCATCTGGAAATCCTCCCCCTATGGGATATCCACCAGCCGGCTATCCTGCCCCTAGTGGGTATCCACCAGCCGGCCATCCTGCCCCTAGCGGATATCCACCAGCTGGTTATCCAGGTCCATCAGCTCCACATAAATCAGGGCATGGATCTGGTATGGGAATGGGAGCTATGTTAGCCGGTGGTGCTGCTGCAGCCGCTGCAGGTTATGGGGTTCACCATCTTGTGCACGGTAGTAGTCACGGAAGAGGTTCCCATGGCTTTGGTTTTGGGGGTCACCATGGCTTTGGTCATGGGAAATTTGGAAAGCATCATGGGGGAAAGTTCAAGCATGGGAAATTTGGAAAGCATCATGGGGGAAAGTTCAAGAAATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

22.56

Weight (kDa)

9.85

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g07870 FvH4_7g07870 FvH4_7g07870 FvH4_7g07880 FvH4_7g07880
malus_domestica	MD00G1214600.v1.1 MD02G1232200.v1.1 MD02G1232400.v1.1 MD02G1232500.v1.1 MD02G1232600.v1.1
prunus_persica	Prupe.2G106200_v2.0.a1 Prupe.2G106200_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106300_v2.0.a1 Prupe.2G106400_v2.0.a1
pyrus_communis	pycom02g20050 pycom02g20070
rosa_chinensis	RchiOBHm_Chr1g0341561 RchiOBHm_Chr1g0341571
rosa_laevigata	RLG00000029102 RLG00000029103
rosa_multiflora	Rmu_co8439465.1_g000001 Rmu_sc0001400.1_g000033 Rmu_sc0003287.1_g000007 Rmu_sc0013921.1_g000004 Rmu_sc0013921.1_g000005
rosa_roxburghii	Rroxscaffold_4G00312200 Rroxscaffold_4G00312210 Rroxscaffold_4G00312250
rosa_rugosa	Rorug01G0155200.1 Rorug01G0155300.1 Rorug01G0155400.1 Rorug01G0155500.1
rosa_samantha	Rh1AG170700 Rh1BG138600 Rh1BG138700 Rh1CG158900 Rh1CG159000 Rh1DG171000 Rh1DG171100
rosa_wichuraiana	Rw1G014210 Rw1G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	174, 210, 491
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	86, 201, 237, 255, 390, 495
AclWI	GGATC	2 cut(s)	103, 454
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	596, 635
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	625, 664
AjnI	CCWGG	3 cut(s)	91, 145, 412
AluBI	AGCT	3 cut(s)	404, 425, 467
AluI	AGCT	3 cut(s)	404, 425, 467
Alw21I	GWGCWC	1 cut(s)	528
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	2 cut(s)	103, 454
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	83, 373
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	5 cut(s)	71, 485, 488, 491, 497
ApoI	RAATTY	2 cut(s)	596, 635
Asp700I	GAANNNNTTC	1 cut(s)	547
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	506, 566
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	528
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	5 cut(s)	58, 472, 475, 484, 503
BccI	CCATC	5 cut(s)	266, 310, 384, 427, 525
BciT130I	CCWGG	3 cut(s)	93, 147, 414
BciVI	GTATCC	8 cut(s)	180, 198, 216, 234, 251, 252, 306, 372
BfaI	CTAG	2 cut(s)	354, 387
BfmI	CTRYAG	2 cut(s)	489, 498
BfuAI	ACCTGC	3 cut(s)	174, 210, 491
BfuI	GTATCC	8 cut(s)	180, 198, 216, 234, 251, 252, 306, 372
BisI	GCNGC	7 cut(s)	72, 86, 486, 489, 492, 495, 498
BlsI	GCNGC	7 cut(s)	73, 87, 487, 490, 493, 496, 499
Bme1390I	CCNGG	3 cut(s)	93, 147, 414
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	152, 550
BmrFI	CCNGG	3 cut(s)	93, 147, 414
BmsI	GCATC	2 cut(s)	616, 655
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	91, 146, 553, 577
Bse118I	RCCGGY	3 cut(s)	338, 371, 476
BseBI	CCWGG	3 cut(s)	93, 147, 414
BseDI	CCNNGG	4 cut(s)	91, 146, 553, 577
BseGI	GGATG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	5 cut(s)	58, 472, 475, 484, 503
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	85, 375
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	3 cut(s)	339, 372, 477
BsnI	GGCC	2 cut(s)	85, 375
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	95, 446
Bsp19I	CCATGG	2 cut(s)	553, 577
BspACI	CCGC	6 cut(s)	86, 201, 237, 255, 390, 495
BspANI	GGCC	2 cut(s)	85, 375
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	152, 550
BspMAI	CTGCAG	2 cut(s)	493, 502
BspMI	ACCTGC	3 cut(s)	174, 210, 491
BspPI	GGATC	2 cut(s)	103, 454
BspT107I	GGYRCC	1 cut(s)	150
BsrFI	RCCGGY	3 cut(s)	338, 371, 476
BssAI	RCCGGY	3 cut(s)	338, 371, 476
BssECI	CCNNGG	4 cut(s)	91, 146, 553, 577
BssMI	GATC	2 cut(s)	95, 446
BssT1I	CCWWGG	2 cut(s)	553, 577
Bst2UI	CCWGG	3 cut(s)	93, 147, 414
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	340, 373
BstDSI	CCRYGG	2 cut(s)	553, 577
BstEII	GGTNACC	1 cut(s)	572
BstENI	CCTNNNNNAGG	2 cut(s)	181, 217
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	98, 449
BstMBI	GATC	2 cut(s)	95, 446
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 473, 482, 491, 494, 497
BstNI	CCWGG	3 cut(s)	93, 147, 414
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	91, 145, 412
BstSFI	CTRYAG	2 cut(s)	489, 498
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	58, 472, 475, 484, 503
BstX2I	RGATCY	1 cut(s)	446
BstXI	CCANNNNNNTGG	2 cut(s)	560, 584
BstYI	RGATCY	1 cut(s)	446
BsuI	GTATCC	8 cut(s)	180, 198, 216, 234, 251, 252, 306, 372
BsuRI	GGCC	2 cut(s)	85, 375
BtgI	CCRYGG	2 cut(s)	553, 577
BtsCI	GGATG	1 cut(s)	376
BveI	ACCTGC	3 cut(s)	174, 210, 491
Cac8I	GCNNGC	2 cut(s)	340, 373
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	3 cut(s)	338, 371, 476
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	7 cut(s)	443, 554, 578, 590, 611, 629, 650
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	97, 448
DpnII	GATC	2 cut(s)	95, 446
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	553, 577
Eco32I	GATATC	3 cut(s)	122, 329, 395
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	2 cut(s)	181, 217
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	3 cut(s)	91, 145, 412
EcoRV	GATATC	3 cut(s)	122, 329, 395
EcoT14I	CCWWGG	2 cut(s)	553, 577
ErhI	CCWWGG	2 cut(s)	553, 577
FaeI	CATG	7 cut(s)	446, 557, 581, 593, 614, 632, 653
FatI	CATG	7 cut(s)	442, 553, 577, 589, 610, 628, 649
FauI	CCCGC	2 cut(s)	194, 230
Fnu4HI	GCNGC	7 cut(s)	72, 86, 486, 489, 492, 495, 498
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	7 cut(s)	72, 86, 486, 489, 492, 495, 498
FspBI	CTAG	2 cut(s)	354, 387
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	7 cut(s)	72, 86, 486, 489, 492, 495, 498
HaeIII	GGCC	2 cut(s)	85, 375
HapII	CCGG	3 cut(s)	339, 372, 477
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	7 cut(s)	446, 557, 581, 593, 614, 632, 653
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	339, 372, 477
HphI	GGTGA	2 cut(s)	506, 566
Hpy166II	GTNNAC	2 cut(s)	514, 526
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	306, 664
Hpy8I	GTNNAC	2 cut(s)	514, 526
HpyAV	CCTTC	2 cut(s)	168, 276
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	140, 491, 500, 526
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 473, 482, 491, 494, 497
Hsp92II	CATG	7 cut(s)	446, 557, 581, 593, 614, 632, 653
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	154
KroI	GCCGGC	2 cut(s)	338, 371
KroNI	GCCGGC	2 cut(s)	340, 373
Kzo9I	GATC	2 cut(s)	95, 446
LmnI	GCTCC	2 cut(s)	430, 464
Lsp1109I	GCAGC	5 cut(s)	58, 472, 475, 484, 503
LweI	GCATC	2 cut(s)	616, 655
MaeI	CTAG	2 cut(s)	354, 387
MaeIII	GTNAC	2 cut(s)	536, 572
MalI	GATC	2 cut(s)	97, 448
MboI	GATC	2 cut(s)	95, 446
MboII	GAAGA	1 cut(s)	555
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	2 cut(s)	596, 635
MroNI	GCCGGC	2 cut(s)	338, 371
MroXI	GAANNNNTTC	1 cut(s)	547
MspA1I	CMGCKG	2 cut(s)	404, 497
MspI	CCGG	3 cut(s)	339, 372, 477
MspR9I	CCNGG	3 cut(s)	93, 147, 414
MvaI	CCWGG	3 cut(s)	93, 147, 414
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	6 cut(s)	68, 473, 482, 491, 494, 497
NaeI	GCCGGC	2 cut(s)	340, 373
NcoI	CCATGG	2 cut(s)	553, 577
NdeII	GATC	2 cut(s)	95, 446
NgoMIV	GCCGGC	2 cut(s)	338, 371
NlaIII	CATG	7 cut(s)	446, 557, 581, 593, 614, 632, 653
NlaIV	GGNNCC	2 cut(s)	152, 550
NmuCI	GTSAC	2 cut(s)	536, 572
PdiI	GCCGGC	2 cut(s)	340, 373
PdmI	GAANNNNTTC	1 cut(s)	547
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	7 cut(s)	73, 87, 487, 490, 493, 496, 499
Psp6I	CCWGG	3 cut(s)	91, 145, 412
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	3 cut(s)	91, 145, 412
PspN4I	GGNNCC	2 cut(s)	152, 550
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	2 cut(s)	493, 502
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	7 cut(s)	72, 86, 486, 489, 492, 495, 498
Sau3AI	GATC	2 cut(s)	95, 446
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	93, 147, 414
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	616, 655
SfcI	CTRYAG	2 cut(s)	489, 498
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	596, 635
SsiI	CCGC	6 cut(s)	86, 201, 237, 255, 390, 495
SspMI	CTAG	2 cut(s)	354, 387
StyD4I	CCNGG	3 cut(s)	91, 145, 412
StyI	CCWWGG	2 cut(s)	553, 577
TaaI	ACNGT	1 cut(s)	530
TasI	AATT	2 cut(s)	596, 635
TauI	GCSGC	2 cut(s)	88, 497
TseFI	GTSAC	2 cut(s)	536, 572
TseI	GCWGC	5 cut(s)	71, 485, 488, 491, 497
Tsp45I	GTSAC	2 cut(s)	536, 572
TspGWI	ACGGA	2 cut(s)	132, 555
Van91I	CCANNNNNTGG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	416
XagI	CCTNNNNNAGG	2 cut(s)	181, 217
XapI	RAATTY	2 cut(s)	596, 635
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	2 cut(s)	354, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.