Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

18464970 .. 18466099

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTTAGCCCTTTCAGCTGTGGCAATTTTAGCCAGCAGGTAGATGATGATGAACCTGTTACTGATCATAGTCCATATTCGACGCCGAAAAAATCAAGACCAAGAAGAAGCACTGGCCTTTTACATAGAATGAATAGCAGGGACAACAAGAACCCCTATGCAAATGTTGGCCTTGAGAAGTTCTCTGCAGTTATGGCCGAGCTAGAAGAGAAGAAGCAGCAGATCTATGCACAAACAGGCTCTCAAGATGAAACCTTAGTTCACTTCGTGTACAAAAAACCAGATGACAGTGTTCCTGTCCCGATTGTGGTTATTCTCAAGGACAAGAAGGATGACAAAACCAAGAGTGGTGGTAGTAGTCCTCATCGCGATGAAAAGCATGTTGTAAGTACCAACCGGACTACAGAAGCCAAGAAACATGTGACAGCTTCCGATGAGTTAACTAAGAAAAGGGTGTACAAGAAGCGCTCGGACGTGGGGATGATGATGCCTAGTTTTTATCTTCCGGTGGCTGTGATCTTCATTCTGGTTCTGTTGGCCGTGTTTGGGAGATCTATTGCGATTTTATGCACCTCTATTGGATGGTACGCAGTTCCAACGTTGAAAGAATACCAAAGCTCAAGTACTAGTCCGAGATCAAGAACAACAAAGAAGAAAAACGAATTTATTAGAAGATTGAGTGACAAAAAGATGGTAGCTGATCAGAGATTGTTAGCTTCTCCGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

9.78

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccII	CGCG	1 cut(s)	369
AclI	AACGTT	1 cut(s)	599
AcoI	YGGCCR	2 cut(s)	195, 537
AcsI	RAATTY	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	5 cut(s)	272, 391, 458, 587, 625
AfeI	AGCGCT	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	307, 546
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	604
AhlI	ACTAGT	1 cut(s)	626
AjiI	CACGTC	1 cut(s)	475
AluBI	AGCT	6 cut(s)	18, 202, 428, 618, 698, 716
AluI	AGCT	6 cut(s)	18, 202, 428, 618, 698, 716
Aor51HI	AGCGCT	1 cut(s)	467
AoxI	GGCC	4 cut(s)	115, 169, 195, 537
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	576, 685
BceAI	ACGGC	1 cut(s)	524
BclI	TGATCA	2 cut(s)	64, 700
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	3 cut(s)	203, 492, 627
BfmI	CTRYAG	2 cut(s)	186, 402
BfoI	RGCGCY	1 cut(s)	469
BfuAI	ACCTGC	1 cut(s)	28
BglII	AGATCT	2 cut(s)	222, 551
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	625
BmgBI	CACGTC	1 cut(s)	475
BmsI	GCATC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpuEI	CTTGAG	4 cut(s)	194, 228, 302, 604
BsaHI	GRCGYC	1 cut(s)	83
BsaWI	WCCGGW	2 cut(s)	396, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 546
Bse1I	ACTGG	1 cut(s)	118
BseGI	GGATG	3 cut(s)	337, 486, 587
BseLI	CCNNNNNNNGG	2 cut(s)	307, 546
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	117, 171, 197, 539
BsiSI	CCGG	2 cut(s)	397, 506
BslFI	GGGAC	2 cut(s)	155, 284
BslI	CCNNNNNNNGG	2 cut(s)	307, 546
BsmFI	GGGAC	2 cut(s)	155, 284
BsnI	GGCC	4 cut(s)	117, 171, 197, 539
Bsp1407I	TGTACA	2 cut(s)	270, 456
Bsp143I	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
Bsp68I	TCGCGA	1 cut(s)	369
BspANI	GGCC	4 cut(s)	117, 171, 197, 539
BspFNI	CGCG	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	28
BsrGI	TGTACA	2 cut(s)	270, 456
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
BssNI	GRCGYC	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	83
BstAUI	TGTACA	2 cut(s)	270, 456
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	256, 444
BstF5I	GGATG	3 cut(s)	337, 486, 587
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	6 cut(s)	67, 225, 519, 554, 638, 703
BstMBI	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 30, 194
BstNSI	RCATGY	2 cut(s)	383, 422
BstSFI	CTRYAG	2 cut(s)	186, 402
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	222, 551
BstYI	RGATCY	2 cut(s)	222, 551
BsuRI	GGCC	4 cut(s)	117, 171, 197, 539
BtgZI	GCGATG	2 cut(s)	350, 384
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	337, 486, 587
BtsIMutI	CAGTG	2 cut(s)	111, 295
BtuMI	TCGCGA	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	468
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	5 cut(s)	271, 390, 457, 586, 624
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	380, 419
CviQI	GTAC	5 cut(s)	271, 390, 457, 586, 624
DdeI	CTNAG	2 cut(s)	256, 444
DpnI	GATC	6 cut(s)	66, 224, 518, 553, 637, 702
DpnII	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
DraIII	CACNNNGTG	1 cut(s)	268
EaeI	YGGCCR	2 cut(s)	195, 537
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco47III	AGCGCT	1 cut(s)	467
FaeI	CATG	2 cut(s)	383, 422
FaiI	YATR	9 cut(s)	69, 76, 126, 159, 194, 228, 381, 420, 568
FaqI	GGGAC	2 cut(s)	155, 284
FatI	CATG	2 cut(s)	379, 418
FbaI	TGATCA	2 cut(s)	64, 700
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	3 cut(s)	344, 493, 594
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	3 cut(s)	203, 492, 627
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	4 cut(s)	117, 171, 197, 539
HapII	CCGG	2 cut(s)	397, 506
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	383, 422
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	397, 506
Hpy166II	GTNNAC	4 cut(s)	262, 271, 441, 457
Hpy188I	TCNGA	5 cut(s)	433, 472, 633, 705, 723
Hpy188III	TCNNGA	5 cut(s)	96, 245, 301, 368, 639
Hpy8I	GTNNAC	4 cut(s)	262, 271, 441, 457
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	474, 599
HpyCH4V	TGCA	4 cut(s)	161, 188, 230, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 30, 194
HpyF3I	CTNAG	2 cut(s)	256, 444
HpySE526I	ACGT	2 cut(s)	474, 599
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	383, 422
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	64, 700
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	3 cut(s)	203, 492, 627
MaeII	ACGT	2 cut(s)	474, 599
MaeIII	GTNAC	3 cut(s)	58, 421, 680
MalI	GATC	6 cut(s)	66, 224, 518, 553, 637, 702
MboI	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
MboII	GAAGA	7 cut(s)	117, 218, 223, 494, 511, 664, 684
MflI	RGATCY	2 cut(s)	222, 551
MluCI	AATT	2 cut(s)	25, 662
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	2 cut(s)	372, 583
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	2 cut(s)	397, 506
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	15, 30, 194
NdeII	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
NlaIII	CATG	2 cut(s)	383, 422
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	421, 680
NruI	TCGCGA	1 cut(s)	369
NspI	RCATGY	2 cut(s)	383, 422
PciI	ACATGT	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	222, 551
PvuII	CAGCTG	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	5 cut(s)	272, 391, 458, 587, 625
RsaNI	GTAC	5 cut(s)	271, 390, 457, 586, 624
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	6 cut(s)	64, 222, 516, 551, 635, 700
ScaI	AGTACT	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	2 cut(s)	186, 402
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	4 cut(s)	173, 243, 317, 619
SmoI	CTYRAG	4 cut(s)	173, 243, 317, 619
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	25, 662
SspMI	CTAG	3 cut(s)	203, 492, 627
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	477, 602
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	25, 662
TatI	WGTACW	3 cut(s)	270, 456, 623
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	118, 295
TseFI	GTSAC	2 cut(s)	421, 680
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	2 cut(s)	421, 680
TspDTI	ATGAA	5 cut(s)	66, 146, 264, 387, 511
TspRI	CASTG	2 cut(s)	118, 295
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	2 cut(s)	383, 422
XspI	CTAG	3 cut(s)	203, 492, 627
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.