Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421877.1

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421877.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

catgcagaagcgttagataaattgaccgttaagccctcagtagcgcccgccaaagaagtactacccgagcaacaacctaagaccaatactattaagaacaacatgtttgacttcttgcggaacatcaacttcaggcgaccgtcgttttatcttccggtggttgtggtgttgattttggtgttgctggccgtgtttgggcggtcggtggcgattttgtgtacctctatcggttggtatgcaattccaacactgaaagaaaagagcttgaatactacaagaagatcaagaaaagcttcgaagctaaaggaacatgtgaaaaggtcgagtgagaataagacggtgattggtactagtgaaggattgtcttctccgaaaagtgacaacaataccacgccccgatcccggcaacatggtcaccggaaaagttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.12

Weight (kDa)

10.57

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	48, 118, 199
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	3 cut(s)	60, 220, 349
AfiI	CCNNNNNNNGG	2 cut(s)	195, 402
AflIII	ACRYGT	2 cut(s)	102, 310
AgsI	TTSAA	1 cut(s)	268
AhlI	ACTAGT	1 cut(s)	350
AluBI	AGCT	3 cut(s)	264, 293, 301
AluI	AGCT	3 cut(s)	264, 293, 301
AlwI	GGATC	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	352, 407
AsuII	TTCGAA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	357
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	47
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	403
BsaWI	WCCGGW	2 cut(s)	154, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 402
BseLI	CCNNNNNNNGG	2 cut(s)	195, 402
BseMII	CTCAG	1 cut(s)	51
Bsh1285I	CGRYCG	2 cut(s)	140, 203
BshFI	GGCC	1 cut(s)	188
BsiEI	CGRYCG	2 cut(s)	140, 203
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	155, 403, 418
BslI	CCNNNNNNNGG	2 cut(s)	195, 402
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	281, 398
BspACI	CCGC	3 cut(s)	48, 118, 199
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	296
BssMI	GATC	2 cut(s)	281, 398
Bst4CI	ACNGT	3 cut(s)	28, 141, 340
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	48, 186
BstDEI	CTNAG	2 cut(s)	37, 78
BstEII	GGTNACC	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	284, 401
BstMBI	GATC	2 cut(s)	281, 398
BstMCI	CGRYCG	2 cut(s)	140, 203
BstNSI	RCATGY	2 cut(s)	106, 314
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	48, 186
CfoI	GCGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	59, 219, 348
CviAII	CATG	4 cut(s)	2, 103, 311, 410
CviJI	RGCY	5 cut(s)	34, 188, 264, 293, 301
CviKI_1	RGCY	5 cut(s)	34, 188, 264, 293, 301
CviQI	GTAC	3 cut(s)	59, 219, 348
DdeI	CTNAG	2 cut(s)	37, 78
DpnI	GATC	2 cut(s)	283, 400
DpnII	GATC	2 cut(s)	281, 398
EaeI	YGGCCR	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
FaeI	CATG	3 cut(s)	106, 314, 413
FaiI	YATR	5 cut(s)	3, 104, 237, 312, 411
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FatI	CATG	3 cut(s)	102, 310, 409
FauI	CCCGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	3 cut(s)	155, 403, 418
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	106, 314, 413
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	291
HpaII	CCGG	3 cut(s)	155, 403, 418
HphI	GGTGA	2 cut(s)	352, 407
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	28, 141, 340
HpyCH4V	TGCA	2 cut(s)	5, 239
HpyF3I	CTNAG	2 cut(s)	37, 78
Hsp92II	CATG	3 cut(s)	106, 314, 413
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	281, 398
LpnPI	CCDG	4 cut(s)	118, 168, 170, 416
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	377, 413
MalI	GATC	2 cut(s)	283, 400
MboI	GATC	2 cut(s)	281, 398
MboII	GAAGA	3 cut(s)	143, 291, 357
MluCI	AATT	2 cut(s)	20, 240
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	46, 232
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	30, 93
MspI	CCGG	3 cut(s)	155, 403, 418
MspR9I	CCNGG	1 cut(s)	403
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	2 cut(s)	281, 398
NlaIII	CATG	3 cut(s)	106, 314, 413
NmuCI	GTSAC	2 cut(s)	377, 413
NspI	RCATGY	2 cut(s)	106, 314
NspV	TTCGAA	1 cut(s)	296
PciI	ACATGT	2 cut(s)	102, 310
PdmI	GAANNNNTTC	1 cut(s)	292
PscI	ACATGT	2 cut(s)	102, 310
PspEI	GGTNACC	1 cut(s)	413
RsaI	GTAC	3 cut(s)	60, 220, 349
RsaNI	GTAC	3 cut(s)	59, 219, 348
SaqAI	TTAA	2 cut(s)	30, 93
Sau3AI	GATC	2 cut(s)	281, 398
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	6 cut(s)	79, 224, 266, 295, 303, 323
SfuI	TTCGAA	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	2 cut(s)	20, 240
SsiI	CCGC	3 cut(s)	48, 118, 199
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	28, 141, 340
TaqI	TCGA	2 cut(s)	296, 323
TasI	AATT	2 cut(s)	20, 240
TatI	WGTACW	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	30, 93
Tru9I	TTAA	2 cut(s)	30, 93
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	377, 413
Tsp45I	GTSAC	2 cut(s)	377, 413
TspRI	CASTG	1 cut(s)	255
XceI	RCATGY	2 cut(s)	106, 314
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.