Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

3960672 .. 3961463

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTAAGCCCTTTCAGCTGCGGATTCTTCCACTCGGAAGACGTTCAAGATGAACCCGTAAACATTTCGAGTCCTTGCTCCACGCCGAGAAGATCAAGGAGAAGCAACAAGGACAGCAAGAACCCCTATTCGAGTCGAGGCCTCGACAAGTTCTCTGCGCTCTTAGCCGATCTCGAAGAGAAGCGGCAGAAGATTTACGCGCAAACGCCTCCGCAAGACATATCCTTCGTCCGCTTCGTGTTCAAGGACTCGAAGGAGGACTCCCCTCCCGTCCCGATCGTGATCAAGTTGAAGGACAACAAGAAAGAAGACCACAAAGAGAAAACCAGAACTCAGCTGGTGAAAGAAAAGCATGCAACGCGTAATTCGGGAAGTTTGGATAAGTTTACCGTTGAGCCCTCCACGCCCACAAAAGAAGTAGCAGCTCAGCAACCACCAAAGAATGATAAGAGGGTGCGTTCGTCATTGAACTTCAAAGGAACGAACTTGGGTATGTGGAGAAGGCCTTCTTACTATTTGCCGGTGGTTGTGGTGTTCATTTTGGTGCTGCTGGCGGTGTTCGGTCGGTCGTTTGCGATTCTGTGCACGTCTATCGGCTGGTACGCATTGCCGAATTTGAAAGAAAGCAATTCCGAGACAAAAAGAGCATCAAAGAAGAAAGACCATAGTAGAAGATTGAGTGACAATAATCATAATAATGATCATGGATCATTGTCTTCTCCAAAGAGTAACAACACGGCGGGCTACAGTACGCCCCGATCACAACAACACGGTCACCGGAAAAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.87

Weight (kDa)

9.93

Isoelectric Point (pI)

70.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	200, 361
AciI	CCGC	6 cut(s)	21, 184, 212, 232, 554, 740
AclWI	GGATC	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	2 cut(s)	602, 751
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	47, 244, 292, 469, 475, 619
AjiI	CACGTC	1 cut(s)	588
AluBI	AGCT	3 cut(s)	18, 337, 425
AluI	AGCT	3 cut(s)	18, 337, 425
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	1 cut(s)	629
Alw44I	GTGCAC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	2 cut(s)	139, 503
ApaLI	GTGCAC	1 cut(s)	583
ApeKI	GCWGC	3 cut(s)	18, 422, 547
ApoI	RAATTY	1 cut(s)	613
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	2 cut(s)	42, 505
AspLEI	GCGC	2 cut(s)	160, 202
AsuHPI	GGTGA	2 cut(s)	352, 767
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	3 cut(s)	45, 315, 708
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	5, 434, 534
BceAI	ACGGC	1 cut(s)	753
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BclI	TGATCA	2 cut(s)	282, 700
BcoDI	GTCTC	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	745
BisI	GCNGC	4 cut(s)	19, 185, 423, 548
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	20, 186, 424, 549
BmgBI	CACGTC	1 cut(s)	588
BmsI	GCATC	1 cut(s)	656
BpiI	GAAGAC	3 cut(s)	45, 315, 708
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	777
Bse118I	RCCGGY	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	605
Bse8I	GATNNNNATC	1 cut(s)	281
BseJI	GATNNNNATC	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	2 cut(s)	347, 440
BseSI	GKGCMC	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	5, 434, 534
Bsh1236I	CGCG	2 cut(s)	200, 361
Bsh1285I	CGRYCG	3 cut(s)	279, 565, 569
BshFI	GGCC	2 cut(s)	141, 505
BsiEI	CGRYCG	3 cut(s)	279, 565, 569
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	521, 778
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	141, 505
Bsp1286I	GDGCHC	2 cut(s)	399, 587
Bsp143I	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	6 cut(s)	21, 184, 212, 232, 554, 740
BspANI	GGCC	2 cut(s)	141, 505
BspCNI	CTCAG	2 cut(s)	346, 439
BspFNI	CGCG	2 cut(s)	200, 361
BspPI	GGATC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	520
BssMI	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
Bst4CI	ACNGT	3 cut(s)	391, 749, 773
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	354, 552, 742
BstDEI	CTNAG	3 cut(s)	163, 333, 426
BstEII	GGTNACC	1 cut(s)	773
BstFNI	CGCG	2 cut(s)	200, 361
BstHHI	GCGC	2 cut(s)	160, 202
BstKTI	GATC	7 cut(s)	95, 172, 279, 285, 703, 710, 761
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
BstMCI	CGRYCG	3 cut(s)	279, 565, 569
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 164, 358, 403
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	773
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	587
BstUI	CGCG	2 cut(s)	200, 361
BstV1I	GCAGC	3 cut(s)	5, 434, 534
BstV2I	GAAGAC	3 cut(s)	45, 315, 708
BsuRI	GGCC	2 cut(s)	141, 505
BtrI	CACGTC	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	354, 552, 742
CfoI	GCGC	2 cut(s)	160, 202
Cfr10I	RCCGGY	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	601, 750
CviAII	CATG	2 cut(s)	353, 704
CviQI	GTAC	2 cut(s)	601, 750
DdeI	CTNAG	3 cut(s)	163, 333, 426
DpnI	GATC	7 cut(s)	94, 171, 278, 284, 702, 709, 760
DpnII	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco147I	AGGCCT	2 cut(s)	141, 505
Eco24I	GRGCYC	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	2 cut(s)	356, 707
FaiI	YATR	6 cut(s)	221, 354, 494, 666, 693, 705
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	352, 703
FauI	CCCGC	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	282, 700
Fnu4HI	GCNGC	4 cut(s)	19, 185, 423, 548
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	19, 185, 423, 548
GlaI	GCGC	2 cut(s)	159, 201
GluI	GCNGC	4 cut(s)	19, 185, 423, 548
HaeIII	GGCC	2 cut(s)	141, 505
HapII	CCGG	2 cut(s)	521, 778
HhaI	GCGC	2 cut(s)	160, 202
Hin1II	CATG	2 cut(s)	356, 707
Hin6I	GCGC	2 cut(s)	158, 200
HinP1I	GCGC	2 cut(s)	158, 200
HinfI	GANTC	6 cut(s)	24, 70, 133, 248, 260, 577
HpaII	CCGG	2 cut(s)	521, 778
HphI	GGTGA	2 cut(s)	352, 767
Hpy166II	GTNNAC	3 cut(s)	61, 387, 585
Hpy188I	TCNGA	2 cut(s)	37, 634
Hpy188III	TCNNGA	5 cut(s)	47, 173, 274, 280, 369
Hpy8I	GTNNAC	3 cut(s)	61, 387, 585
HpyAV	CCTTC	5 cut(s)	235, 247, 286, 495, 516
HpyCH4III	ACNGT	3 cut(s)	391, 749, 773
HpyCH4IV	ACGT	2 cut(s)	42, 587
HpyCH4V	TGCA	2 cut(s)	356, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 164, 358, 403
HpyF3I	CTNAG	3 cut(s)	163, 333, 426
HpySE526I	ACGT	2 cut(s)	42, 587
Hsp92II	CATG	2 cut(s)	356, 707
HspAI	GCGC	2 cut(s)	158, 200
Ksp22I	TGATCA	2 cut(s)	282, 700
Kzo9I	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	323, 340, 534, 536, 583
Lsp1109I	GCAGC	3 cut(s)	5, 434, 534
LweI	GCATC	1 cut(s)	656
MaeII	ACGT	2 cut(s)	42, 587
MaeIII	GTNAC	3 cut(s)	680, 728, 773
MalI	GATC	7 cut(s)	94, 171, 278, 284, 702, 709, 760
MboI	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
MboII	GAAGA	9 cut(s)	19, 50, 102, 188, 202, 320, 667, 684, 708
MhlI	GDGCHC	2 cut(s)	399, 587
MluCI	AATT	3 cut(s)	364, 613, 628
MluI	ACGCGT	1 cut(s)	359
MlyI	GAGTC	4 cut(s)	79, 142, 242, 254
MnlI	CCTC	7 cut(s)	131, 152, 219, 250, 276, 409, 444
MroXI	GAANNNNTTC	2 cut(s)	42, 505
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	542, 696
MspA1I	CMGCKG	2 cut(s)	18, 337
MspI	CCGG	2 cut(s)	521, 778
MvnI	CGCG	2 cut(s)	200, 361
MwoI	GCNNNNNNNGC	4 cut(s)	15, 164, 358, 403
NdeII	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
NlaIII	CATG	2 cut(s)	356, 707
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	680, 773
NspI	RCATGY	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	356
PceI	AGGCCT	2 cut(s)	141, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	2 cut(s)	42, 505
PfeI	GAWTC	2 cut(s)	24, 577
PkrI	GCNGC	4 cut(s)	20, 186, 424, 549
Ple19I	CGATCG	1 cut(s)	279
PleI	GAGTC	4 cut(s)	78, 141, 242, 254
PpsI	GAGTC	4 cut(s)	78, 141, 242, 254
PspEI	GGTNACC	1 cut(s)	773
PvuI	CGATCG	1 cut(s)	279
PvuII	CAGCTG	2 cut(s)	18, 337
RsaI	GTAC	2 cut(s)	602, 751
RsaNI	GTAC	2 cut(s)	601, 750
RseI	CAYNNNNRTG	2 cut(s)	542, 696
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	4 cut(s)	19, 185, 423, 548
Sau3AI	GATC	7 cut(s)	92, 169, 276, 282, 700, 707, 758
SchI	GAGTC	4 cut(s)	79, 142, 242, 254
SduI	GDGCHC	2 cut(s)	399, 587
SetI	ASST	5 cut(s)	20, 45, 339, 427, 590
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	542, 696
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	3 cut(s)	364, 613, 628
SseBI	AGGCCT	2 cut(s)	141, 505
SsiI	CCGC	6 cut(s)	21, 184, 212, 232, 554, 740
StuI	AGGCCT	2 cut(s)	141, 505
TaaI	ACNGT	3 cut(s)	391, 749, 773
TaiI	ACGT	2 cut(s)	45, 590
TaqI	TCGA	6 cut(s)	68, 131, 136, 144, 174, 251
TaqII	GACCGA	2 cut(s)	551, 555
TasI	AATT	3 cut(s)	364, 613, 628
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	24, 577
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	680, 773
TseI	GCWGC	3 cut(s)	18, 422, 547
Tsp45I	GTSAC	2 cut(s)	680, 773
TspDTI	ATGAA	2 cut(s)	66, 526
VneI	GTGCAC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmnI	GAANNNNTTC	2 cut(s)	42, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.