Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

6761669 .. 6762460

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTTAGCCCTTTCAGCTGCGTATTTTTCCAACCGAAAGATGTTCAAGACGAACCCTTTTCAAGTCCTTGCTCCACGCCTAAAAGATCAACAAAGAGAAGCAGCAAGGAAAGCAAGAACCCCTATTCAAGTCGAGGCCTCGACAAGTTCTCTGAACTCTTAGCCGATCTCGAAGACAAACGGCAGAAGATTTATGCGCAAACGCCTCCGCAAGACATATCCCTCGTCCGCTTCATGTTCAAGGACTCGAACGAGGATGCCCCTCCCGTCCCGGTCGTGATCAAGTTGAAGGACAACAAGAAAGAAGATCGCAAAGAGAAAACCAAAACTCAGGTGGTGAAAGAAAAGCATGCAACTAGTAATTCGGATGGCTTGGATAAATTTAACGTCGAGCCCTCCACGCCCACAAAAGAAATATCAGTTCAGCAACAACCAAAGAATTATAAGAAGGTGCGTTCGTCATTAAACTTTAAGGACATGAACTTGGGCATCTGGAGAAGGCCTTCTTACTATTTGCCGGTGGTTGTGGTGTTCATTTTGGTGCTGCTGGCGGTGTTCGGGCGGTCGGTTGCAATTCTGTGCACGTCTATCGGCTGGTACGCATTGCCGACGTTGGAAGAAAGCAATGGCAAGACAAAAAGAGCATCAAAGAAGAAAAATCATGGTAGAAGATTGAGTGACAATAATAATAATAATAATAATCATGGACTATTGTCTTCTCCAAAGAGTAACAACACAGGGGCCGGAAGCACTCCCAGATCACAACAACACGGTCACCAGAAAATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.82

Weight (kDa)

9.85

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
Acc16I	TGCGCA	1 cut(s)	198
AciI	CCGC	4 cut(s)	209, 229, 551, 562
AcsI	RAATTY	2 cut(s)	380, 783
AfaI	GTAC	1 cut(s)	599
AgsI	TTSAA	5 cut(s)	47, 63, 129, 241, 289
AhlI	ACTAGT	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	585
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	584
Alw44I	GTGCAC	1 cut(s)	580
AoxI	GGCC	3 cut(s)	136, 500, 741
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	18, 102, 544
ApoI	RAATTY	2 cut(s)	380, 783
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	741
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	349, 767
BaeGI	GKGCMC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	180, 708
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	3 cut(s)	5, 114, 531
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	3 cut(s)	19, 103, 545
BlsI	GCNGC	3 cut(s)	20, 104, 546
Bme1390I	CCNGG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	1 cut(s)	742
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	3 cut(s)	247, 498, 653
BoxI	GACNNNNGTC	1 cut(s)	712
BpiI	GAAGAC	2 cut(s)	180, 708
BpmI	CTGGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	517
Bse3DI	GCAATG	2 cut(s)	602, 631
BseGI	GGATG	2 cut(s)	262, 373
BseMI	GCAATG	2 cut(s)	602, 631
BseMII	CTCAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	5, 114, 531
Bsh1285I	CGRYCG	2 cut(s)	276, 566
BshFI	GGCC	3 cut(s)	138, 502, 743
BsiEI	CGRYCG	2 cut(s)	276, 566
BsiHKAI	GWGCWC	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	272, 518, 744
BslFI	GGGAC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	138, 502, 743
Bsp1286I	GDGCHC	2 cut(s)	396, 584
Bsp143I	GATC	5 cut(s)	86, 166, 279, 307, 758
BspACI	CCGC	4 cut(s)	209, 229, 551, 562
BspANI	GGCC	3 cut(s)	138, 502, 743
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	742
BsrDI	GCAATG	2 cut(s)	602, 631
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssMI	GATC	5 cut(s)	86, 166, 279, 307, 758
Bst4CI	ACNGT	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	351, 549
BstDEI	CTNAG	2 cut(s)	160, 330
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	2 cut(s)	262, 373
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	5 cut(s)	89, 169, 282, 310, 761
BstMBI	GATC	5 cut(s)	86, 166, 279, 307, 758
BstMCI	CGRYCG	2 cut(s)	276, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 111, 400
BstNSI	RCATGY	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	712
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	5, 114, 531
BstV2I	GAAGAC	2 cut(s)	180, 708
BsuRI	GGCC	3 cut(s)	138, 502, 743
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	262, 373
Cac8I	GCNNGC	2 cut(s)	351, 549
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	5 cut(s)	235, 350, 478, 662, 704
CviJI	RGCY	9 cut(s)	9, 18, 138, 164, 372, 394, 502, 594, 743
CviKI_1	RGCY	9 cut(s)	9, 18, 138, 164, 372, 394, 502, 594, 743
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	160, 330
DpnI	GATC	5 cut(s)	88, 168, 281, 309, 760
DpnII	GATC	5 cut(s)	86, 166, 279, 307, 758
Eco147I	AGGCCT	2 cut(s)	138, 502
Eco24I	GRGCYC	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	5 cut(s)	238, 353, 481, 665, 707
FaiI	YATR	8 cut(s)	195, 218, 236, 351, 444, 479, 663, 705
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	5 cut(s)	234, 349, 477, 661, 703
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	19, 103, 545
FokI	GGATG	2 cut(s)	269, 380
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	19, 103, 545
FspBI	CTAG	1 cut(s)	357
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	19, 103, 545
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	138, 502, 743
HapII	CCGG	3 cut(s)	272, 518, 744
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	238, 353, 481, 665, 707
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	3 cut(s)	272, 518, 744
HphI	GGTGA	2 cut(s)	349, 767
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	2 cut(s)	154, 367
Hpy188III	TCNNGA	4 cut(s)	47, 170, 277, 493
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	2 cut(s)	392, 613
HpyAV	CCTTC	4 cut(s)	283, 442, 492, 513
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4IV	ACGT	3 cut(s)	387, 584, 611
HpyCH4V	TGCA	3 cut(s)	353, 572, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 111, 400
HpyF3I	CTNAG	2 cut(s)	160, 330
HpySE526I	ACGT	3 cut(s)	387, 584, 611
Hsp92II	CATG	5 cut(s)	238, 353, 481, 665, 707
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	86, 166, 279, 307, 758
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	285, 317, 478, 531, 533, 580, 723, 757, 769
Lsp1109I	GCAGC	3 cut(s)	5, 114, 531
LweI	GCATC	3 cut(s)	247, 498, 653
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	3 cut(s)	387, 584, 611
MaeIII	GTNAC	3 cut(s)	677, 728, 773
MalI	GATC	5 cut(s)	88, 168, 281, 309, 760
MboI	GATC	5 cut(s)	86, 166, 279, 307, 758
MboII	GAAGA	7 cut(s)	185, 199, 317, 629, 664, 681, 708
MhlI	GDGCHC	2 cut(s)	396, 584
MluCI	AATT	5 cut(s)	361, 380, 439, 573, 783
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	55, 594
MnlI	CCTC	7 cut(s)	128, 149, 216, 233, 247, 273, 406
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	3 cut(s)	384, 464, 471
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	272, 518, 744
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	15, 111, 400
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	5 cut(s)	86, 166, 279, 307, 758
NlaIII	CATG	5 cut(s)	238, 353, 481, 665, 707
NlaIV	GGNNCC	1 cut(s)	742
NmuCI	GTSAC	2 cut(s)	677, 773
NsbI	TGCGCA	1 cut(s)	198
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PceI	AGGCCT	2 cut(s)	138, 502
PdmI	GAANNNNTTC	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	20, 104, 546
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshAI	GACNNNNGTC	1 cut(s)	712
PsiI	TTATAA	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	741
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	3 cut(s)	384, 464, 471
SatI	GCNGC	3 cut(s)	19, 103, 545
Sau3AI	GATC	5 cut(s)	86, 166, 279, 307, 758
Sau96I	GGNCC	1 cut(s)	741
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	396, 584
SetI	ASST	6 cut(s)	20, 336, 390, 453, 587, 614
SfaNI	GCATC	3 cut(s)	247, 498, 653
SmiMI	CAYNNNNRTG	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	356
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	5 cut(s)	361, 380, 439, 573, 783
SseBI	AGGCCT	2 cut(s)	138, 502
SsiI	CCGC	4 cut(s)	209, 229, 551, 562
SspMI	CTAG	1 cut(s)	357
StuI	AGGCCT	2 cut(s)	138, 502
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	773
TaiI	ACGT	3 cut(s)	390, 587, 614
TaqI	TCGA	5 cut(s)	133, 141, 171, 248, 390
TasI	AATT	5 cut(s)	361, 380, 439, 573, 783
Tru1I	TTAA	3 cut(s)	384, 464, 471
Tru9I	TTAA	3 cut(s)	384, 464, 471
TseFI	GTSAC	2 cut(s)	677, 773
TseI	GCWGC	3 cut(s)	18, 102, 544
Tsp45I	GTSAC	2 cut(s)	677, 773
TspDTI	ATGAA	3 cut(s)	223, 494, 523
VneI	GTGCAC	1 cut(s)	580
XapI	RAATTY	2 cut(s)	380, 783
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.