Prupe.1G422400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003633
Physical Location & Seq
Forward (+)
36463372 .. 36464568
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G422400.1

Sequence Viewer

Length: 807 bp
ATGTTGAGCCCTTTCAGCTGTGGCTTTTTCCACCCAGAAGATGTTCACGATGAACCCACAAGTTCAAGTCCTTGTTCAACTCCAAGAAGATCGTCCAGAAGAAGCAGCAAGGACAGCAAAAACCCATACTCAAGCCGCGGCCTTGACAAGTTCTCTGCACTCTTAGCTGATCTTGAAGAGAAAAGGCAGAAGATTTATGCAGAAACGCCCCCCCAGGACATATCGTTTGTCCGCTTTGTGTTCAAGGACTCAAACGACGACGTCCCGGTGCCCATCGTGATCAAAGTGAAGGACAAAAAGGAAGACCAAAACAACAACAAAATCAGCAAGCCTGATCAATATCAGGTACTGGTAAAAGAAAAGCATGCAACACCACTCGATAAATTGACCGTTGAGCCCTCAACACCCACCAAGGAAGTGTCCCAGGAACAACCCAAGACTGATGATAAGAAGAGGAGGGTGTTTTGGTCATGGAATTTCAGTGACATGAACTTGGGCTTGTGGAAAAGGCCATCTTTTTATTTGCCAGTGGTTATGGTATTCATTTTGGTTCTATTGGCTGTGTTCGGGAGATCTGTTGCCATACTATGCACCTCTATTGGTTGGTATGCATTGCCAACGTTGAAAGAGAGCAGCAGCAGAAGCAGCACAAGAAGAGCATCAAAGAAAAAAGACCACGTTAGAAGATTCAGTGACAACAATAATAAGACGGCAACCGATCATCATGGCTTGTCTTCTCCAAAGAGTAGTAGCCCCACCGCCGGTACGCCCCGGTCGCAACAGCACGGTCACCGGAAAAGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.51

Weight (kDa)

9.74

Isoelectric Point (pI)

72.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 1 cut(s) 138
AciI CCGC 4 cut(s) 136, 138, 232, 759
AclI AACGTT 1 cut(s) 620
AcsI RAATTY 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 348, 766
AfiI CCNNNNNNNGG 1 cut(s) 761
AgsI TTSAA 5 cut(s) 66, 78, 176, 244, 625
AjnI CCWGG 2 cut(s) 213, 423
AluBI AGCT 3 cut(s) 18, 167, 801
AluI AGCT 3 cut(s) 18, 167, 801
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 2 cut(s) 139, 509
ApeKI GCWGC 4 cut(s) 105, 633, 636, 645
ApoI RAATTY 1 cut(s) 475
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
Asp700I GAANNNNTTC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 266, 772
AsuHPI GGTGA 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 11, 399
BbsI GAAGAC 2 cut(s) 309, 726
BbvI GCAGC 4 cut(s) 117, 645, 648, 657
BccI CCATC 2 cut(s) 281, 520
BceAI ACGGC 1 cut(s) 726
BciT130I CCWGG 2 cut(s) 215, 425
BclI TGATCA 2 cut(s) 279, 334
BcnI CCSGG 2 cut(s) 266, 772
BglII AGATCT 1 cut(s) 572
BisI GCNGC 6 cut(s) 106, 136, 139, 634, 637, 646
BlsI GCNGC 6 cut(s) 107, 137, 140, 635, 638, 647
Bme1390I CCNGG 4 cut(s) 215, 266, 425, 772
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 4 cut(s) 215, 266, 425, 772
BmsI GCATC 1 cut(s) 668
BpiI GAAGAC 2 cut(s) 309, 726
BpuEI CTTGAG 1 cut(s) 115
BpuMI CCSGG 2 cut(s) 266, 772
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 136, 213, 411, 423, 770
BsaWI WCCGGW 1 cut(s) 792
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 2 cut(s) 354, 527
Bse3DI GCAATG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 2 cut(s) 215, 425
BseDI CCNNGG 5 cut(s) 136, 213, 411, 423, 770
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 611
BseNI ACTGG 2 cut(s) 354, 527
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 4 cut(s) 117, 645, 648, 657
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 776
BshFI GGCC 2 cut(s) 141, 511
BshNI GGYRCC 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 776
BsiSI CCGG 4 cut(s) 266, 762, 772, 793
BslFI GGGAC 2 cut(s) 248, 406
BslI CCNNNNNNNGG 1 cut(s) 761
BsmFI GGGAC 2 cut(s) 248, 406
BsnI GGCC 2 cut(s) 141, 511
Bsp1286I GDGCHC 3 cut(s) 11, 273, 399
Bsp143I GATC 6 cut(s) 89, 169, 279, 334, 572, 718
BspACI CCGC 4 cut(s) 136, 138, 232, 759
BspANI GGCC 2 cut(s) 141, 511
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 2 cut(s) 354, 527
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 5 cut(s) 136, 213, 411, 423, 770
BssMI GATC 6 cut(s) 89, 169, 279, 334, 572, 718
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 215, 425
Bst4CI ACNGT 2 cut(s) 391, 788
Bst6I CTCTTC 3 cut(s) 171, 446, 649
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 329, 366
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 788
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 6 cut(s) 92, 172, 282, 337, 575, 721
BstMBI GATC 6 cut(s) 89, 169, 279, 334, 572, 718
BstMCI CGRYCG 1 cut(s) 776
BstMWI GCNNNNNNNGC 6 cut(s) 15, 114, 164, 642, 645, 775
BstNI CCWGG 2 cut(s) 215, 425
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 788
BstSCI CCNGG 4 cut(s) 213, 264, 423, 770
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 117, 645, 648, 657
BstV2I GAAGAC 2 cut(s) 309, 726
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 2 cut(s) 141, 511
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 487, 534, 697
Cac8I GCNNGC 2 cut(s) 329, 366
CaiI CAGNNNCTG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 761
Cfr42I CCGCGG 1 cut(s) 139
Csp6I GTAC 2 cut(s) 347, 765
CviAII CATG 4 cut(s) 365, 471, 487, 725
CviQI GTAC 2 cut(s) 347, 765
DdeI CTNAG 1 cut(s) 163
DpnI GATC 6 cut(s) 91, 171, 281, 336, 574, 720
DpnII GATC 6 cut(s) 89, 169, 279, 334, 572, 718
Eam1104I CTCTTC 3 cut(s) 171, 446, 649
EarI CTCTTC 3 cut(s) 171, 446, 649
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 2 cut(s) 11, 399
Eco91I GGTNACC 1 cut(s) 788
EcoO65I GGTNACC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 213, 423
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 11, 399
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 368, 474, 490, 728
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 2 cut(s) 248, 406
FatI CATG 4 cut(s) 364, 470, 486, 724
FbaI TGATCA 2 cut(s) 279, 334
Fnu4HI GCNGC 6 cut(s) 106, 136, 139, 634, 637, 646
FriOI GRGCYC 2 cut(s) 11, 399
Fsp4HI GCNGC 6 cut(s) 106, 136, 139, 634, 637, 646
GluI GCNGC 6 cut(s) 106, 136, 139, 634, 637, 646
HaeIII GGCC 2 cut(s) 141, 511
HapII CCGG 4 cut(s) 266, 762, 772, 793
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 4 cut(s) 368, 474, 490, 728
HinfI GANTC 2 cut(s) 248, 687
HpaII CCGG 4 cut(s) 266, 762, 772, 793
HphI GGTGA 1 cut(s) 782
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 5 cut(s) 47, 96, 173, 277, 568
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 2 cut(s) 260, 263
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 391, 788
HpyCH4IV ACGT 3 cut(s) 261, 620, 678
HpyCH4V TGCA 5 cut(s) 158, 200, 368, 591, 611
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 114, 164, 642, 645, 775
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 3 cut(s) 261, 620, 678
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 4 cut(s) 368, 474, 490, 728
Ksp22I TGATCA 2 cut(s) 279, 334
KspI CCGCGG 1 cut(s) 139
Kzo9I GATC 6 cut(s) 89, 169, 279, 334, 572, 718
LguI GCTCTTC 1 cut(s) 649
Lsp1109I GCAGC 4 cut(s) 117, 645, 648, 657
LweI GCATC 1 cut(s) 668
MaeII ACGT 3 cut(s) 261, 620, 678
MaeIII GTNAC 3 cut(s) 482, 692, 788
MalI GATC 6 cut(s) 91, 171, 281, 336, 574, 720
MboI GATC 6 cut(s) 89, 169, 279, 334, 572, 718
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 3 cut(s) 11, 273, 399
MluCI AATT 2 cut(s) 383, 475
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 4 cut(s) 409, 447, 450, 604
Mph1103I ATGCAT 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 18, 138
MspI CCGG 4 cut(s) 266, 762, 772, 793
MspR9I CCNGG 4 cut(s) 215, 266, 425, 772
MvaI CCWGG 2 cut(s) 215, 425
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 6 cut(s) 15, 114, 164, 642, 645, 775
NciI CCSGG 2 cut(s) 266, 772
NdeII GATC 6 cut(s) 89, 169, 279, 334, 572, 718
NlaIII CATG 4 cut(s) 368, 474, 490, 728
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 482, 692, 788
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 6 cut(s) 107, 137, 140, 635, 638, 647
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 213, 423
PspEI GGTNACC 1 cut(s) 788
PspGI CCWGG 2 cut(s) 213, 423
PspN4I GGNNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 2 cut(s) 348, 766
RsaNI GTAC 2 cut(s) 347, 765
SacII CCGCGG 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 649
SatI GCNGC 6 cut(s) 106, 136, 139, 634, 637, 646
Sau3AI GATC 6 cut(s) 89, 169, 279, 334, 572, 718
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 4 cut(s) 215, 266, 425, 772
SduI GDGCHC 3 cut(s) 11, 273, 399
SetI ASST 8 cut(s) 20, 169, 264, 348, 596, 623, 681, 803
SfaNI GCATC 1 cut(s) 668
Sfr303I CCGCGG 1 cut(s) 139
SgrBI CCGCGG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 1 cut(s) 368
Sse9I AATT 2 cut(s) 383, 475
SsiI CCGC 4 cut(s) 136, 138, 232, 759
StyD4I CCNGG 4 cut(s) 213, 264, 423, 770
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 391, 788
TaiI ACGT 3 cut(s) 264, 623, 681
TaqI TCGA 1 cut(s) 378
TasI AATT 2 cut(s) 383, 475
TauI GCSGC 2 cut(s) 138, 141
TfiI GAWTC 1 cut(s) 687
TscAI CASTG 3 cut(s) 487, 534, 697
TseFI GTSAC 3 cut(s) 482, 692, 788
TseI GCWGC 4 cut(s) 105, 633, 636, 645
Tsp45I GTSAC 3 cut(s) 482, 692, 788
TspDTI ATGAA 3 cut(s) 66, 503, 532
TspRI CASTG 3 cut(s) 487, 534, 697
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 42
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.