Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Reverse (-)

8937076 .. 8937727

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTTAGCCCTTTCAGCTGTGGCAATTTTAGCCAAGTAGATGATGATGAACCCGTTACTGCTAGTCCATATTCGACCACGAAAAAATCAAGATCAAGAAGAAGCAGTAGTCTATTACATAGAAGCAATAGCAGGGACAACAAGAACCCCTATGCAAATGTTGGCCTTGAGAAGTTCTCTGCAGTTATGGCCGAGCTAGAAGAGAAGAGGCAGCAGATCTATGCACAAACAGGCTCCCAAGATGAAACCTTAGTTCACTTCGTGTACAAGAAACCAGATGACAGTGTTCCTGTCCCGATTGTGGTTATTCTCAAGGACAAGAAGGATGACAAAACCAAGAGTGGTGGTAGTAGTCCTGATCGAGATGAAAAGCATGTTGGTGTACAAGAAGTGCTCGGACATGTGGATGATGCCGAGTTTTTATCTTCCAGTGGCTGTGATATTCATTCTCGTATTGTTGGCCGTGTTTGGGAGATCGATTGCGATTTTGTGTACCTCTATTGGGTGGTACGCAGTTCCGACGTTGAAAGAATACCAGAGCCCAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

5.56

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	189, 460
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	4 cut(s)	266, 384, 494, 510
AfiI	CCNNNNNNNGG	3 cut(s)	301, 469, 502
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	527
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	2 cut(s)	18, 196
AluI	AGCT	2 cut(s)	18, 196
Alw21I	GWGCWC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	435
AoxI	GGCC	3 cut(s)	163, 189, 460
ApeKI	GCWGC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	447
BfaI	CTAG	3 cut(s)	63, 197, 550
BfmI	CTRYAG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	1 cut(s)	400
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpuEI	CTTGAG	2 cut(s)	188, 296
Bsa29I	ATCGAT	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 469, 502
Bse1I	ACTGG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	477
BseGI	GGATG	2 cut(s)	331, 412
BseLI	CCNNNNNNNGG	3 cut(s)	301, 469, 502
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	3 cut(s)	165, 191, 462
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	149, 278
BslI	CCNNNNNNNGG	3 cut(s)	301, 469, 502
BsmFI	GGGAC	2 cut(s)	149, 278
BsnI	GGCC	3 cut(s)	165, 191, 462
Bsp1286I	GDGCHC	2 cut(s)	396, 543
Bsp1407I	TGTACA	2 cut(s)	264, 382
Bsp143I	GATC	4 cut(s)	92, 216, 358, 474
BspANI	GGCC	3 cut(s)	165, 191, 462
BspDI	ATCGAT	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	184
BsrGI	TGTACA	2 cut(s)	264, 382
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	92, 216, 358, 474
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	195, 200
BstAUI	TGTACA	2 cut(s)	264, 382
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	331, 412
BstKTI	GATC	4 cut(s)	95, 219, 361, 477
BstMBI	GATC	4 cut(s)	92, 216, 358, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
BstNSI	RCATGY	2 cut(s)	377, 404
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	165, 191, 462
BsuTUI	ATCGAT	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	331, 412
BtsIMutI	CAGTG	2 cut(s)	289, 436
CaiI	CAGNNNCTG	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	4 cut(s)	265, 383, 493, 509
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	374, 401
CviQI	GTAC	4 cut(s)	265, 383, 493, 509
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	4 cut(s)	94, 218, 360, 476
DpnII	GATC	4 cut(s)	92, 216, 358, 474
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	189, 460
Eam1104I	CTCTTC	2 cut(s)	195, 200
EarI	CTCTTC	2 cut(s)	195, 200
Eco24I	GRGCYC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	2 cut(s)	377, 404
FaiI	YATR	7 cut(s)	70, 120, 153, 188, 222, 375, 402
FaqI	GGGAC	2 cut(s)	149, 278
FatI	CATG	2 cut(s)	373, 400
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	2 cut(s)	338, 419
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	3 cut(s)	63, 197, 550
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	165, 191, 462
Hin1II	CATG	2 cut(s)	377, 404
Hpy166II	GTNNAC	4 cut(s)	256, 265, 383, 493
Hpy188I	TCNGA	2 cut(s)	398, 520
Hpy188III	TCNNGA	5 cut(s)	90, 96, 295, 356, 362
Hpy8I	GTNNAC	4 cut(s)	256, 265, 383, 493
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	155, 182, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	377, 404
Kzo9I	GATC	4 cut(s)	92, 216, 358, 474
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	118, 216, 288, 303, 369, 442
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	3 cut(s)	63, 197, 550
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	94, 218, 360, 476
MboI	GATC	4 cut(s)	92, 216, 358, 474
MboII	GAAGA	4 cut(s)	111, 212, 217, 417
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	396, 543
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	2 cut(s)	201, 506
MslI	CAYNNNNRTG	2 cut(s)	378, 405
MspA1I	CMGCKG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
NdeII	GATC	4 cut(s)	92, 216, 358, 474
NlaIII	CATG	2 cut(s)	377, 404
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	2 cut(s)	217, 439
NspI	RCATGY	2 cut(s)	377, 404
PciI	ACATGT	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	4 cut(s)	266, 384, 494, 510
RsaNI	GTAC	4 cut(s)	265, 383, 493, 509
RseI	CAYNNNNRTG	2 cut(s)	378, 405
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	4 cut(s)	92, 216, 358, 474
SduI	GDGCHC	2 cut(s)	396, 543
SetI	ASST	5 cut(s)	20, 198, 251, 498, 525
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	378, 405
SmlI	CTYRAG	2 cut(s)	167, 311
SmoI	CTYRAG	2 cut(s)	167, 311
Sse9I	AATT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	63, 197, 550
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	3 cut(s)	74, 361, 477
TasI	AATT	1 cut(s)	25
TatI	WGTACW	2 cut(s)	264, 382
TscAI	CASTG	2 cut(s)	289, 436
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	63, 258, 381, 434
TspRI	CASTG	2 cut(s)	289, 436
XceI	RCATGY	2 cut(s)	377, 404
XspI	CTAG	3 cut(s)	63, 197, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.