Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

16012930 .. 16013715

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTCAGCCCTTTCAGCTGTGCCAGTTTTAGTCACCAAGTAGAAGAAGATGATGAGCACATGATTTCAACTTCGCCTCCATCTCCAAGAAAATCATCAAGATCGAGAAGCGTTGGCCTGATTTACAGAAGACACAACAAGGACAGCAAAAACCCCTATTCGGACCGGGGCCTTGACAAGTTTTCTGCACTTGTAGCTGACCTAGAAGAGAAAAGGCAGAAGATTTATTCGCAAATGGACCCGAAAGACAAATCTTTTGTGCGGTTCGTGTTCAAGGATGAGACCGATACAAGTGCTCCGGTTCCAATCGTGATCAAACTGAAAGACAAAACAAAGACAACTAGTGATCGTGAAGAGAAGCATGCAAACCCTAATTCAGAAGCCTTTGAAAATATTGACCAATCCCACATCGACAAGAAAGACATGAAGCAGAAGCAACCGAGATCGGAATCTGATCAAGAGAGCAAGAAAGGGAGATTTTCAAGTTGGAAAATGAAGTTGGATGAGTGGAGAAAGCCATATTATTATTTGCCGGTCGTTGTGATCTTTATTTTGGTGCTGTTGACTTTGTTTGGGCGGTCGTTTGCCATATTGTGTACGTCTATTTTTTGGTACGCGGTTCCAACTGTGAAAGAGAGCTCGAGTAATGCAAGGAGGCCGGTGGCATCAAAGAAGAAAGATTATGTTAGAAGATTGAGTAGCAATAAGATGTTAGTTGCTGAGGGAAGTACAAACGCCGTGGCTATACCCCCATCTCAACGACACAGTCACCAGAAAAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

30.09

Weight (kDa)

9.64

Isoelectric Point (pI)

66.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	617
AciI	CCGC	3 cut(s)	262, 577, 617
AfaI	GTAC	3 cut(s)	598, 614, 730
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	69, 274, 389, 483
AhlI	ACTAGT	1 cut(s)	341
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	18, 197, 639
AluI	AGCT	3 cut(s)	18, 197, 639
Alw21I	GWGCWC	3 cut(s)	60, 298, 641
Alw26I	GTCTC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	3 cut(s)	115, 169, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	3 cut(s)	163, 169, 238
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	26, 761
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	2 cut(s)	163, 238
BanII	GRGCYC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	3 cut(s)	60, 298, 641
BbvCI	CCTCAGC	1 cut(s)	720
BccI	CCATC	2 cut(s)	88, 760
BceAI	ACGGC	1 cut(s)	722
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BclI	TGATCA	2 cut(s)	312, 454
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	2 cut(s)	203, 342
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	163, 238
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	3 cut(s)	163, 169, 238
BmiI	GGNNCC	4 cut(s)	170, 240, 303, 621
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	166, 738
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	2 cut(s)	532, 658
Bse1I	ACTGG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	166, 738
BseGI	GGATG	2 cut(s)	283, 508
BseJI	GATNNNNATC	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	617
Bsh1285I	CGRYCG	2 cut(s)	537, 581
BshFI	GGCC	3 cut(s)	117, 171, 658
BsiEI	CGRYCG	2 cut(s)	537, 581
BsiHKAI	GWGCWC	3 cut(s)	60, 298, 641
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	166, 299, 533, 659
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	117, 171, 658
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	3 cut(s)	60, 298, 641
Bsp143I	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
BspACI	CCGC	3 cut(s)	262, 577, 617
BspANI	GGCC	3 cut(s)	117, 171, 658
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	4 cut(s)	170, 240, 303, 621
BspTNI	GGTCTC	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	532, 658
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	2 cut(s)	532, 658
BssECI	CCNNGG	2 cut(s)	166, 738
BssMI	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
Bst4CI	ACNGT	2 cut(s)	628, 767
Bst6I	CTCTTC	2 cut(s)	201, 348
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	720
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	283, 508
BstFNI	CGCG	1 cut(s)	617
BstKTI	GATC	6 cut(s)	104, 315, 349, 446, 457, 546
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
BstMCI	CGRYCG	2 cut(s)	537, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 194
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	117, 171, 658
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	2 cut(s)	283, 508
Cac8I	GCNNGC	1 cut(s)	363
Cfr10I	RCCGGY	2 cut(s)	532, 658
Cfr13I	GGNCC	3 cut(s)	163, 169, 238
CpoI	CGGWCCG	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	597, 613, 729
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	3 cut(s)	61, 362, 424
CviQI	GTAC	3 cut(s)	597, 613, 729
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	6 cut(s)	103, 314, 348, 445, 456, 545
DpnII	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
Eam1104I	CTCTTC	2 cut(s)	201, 348
EarI	CTCTTC	2 cut(s)	201, 348
Ecl136II	GAGCTC	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	641
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	163, 238
Eco53kI	GAGCTC	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	641
FaeI	CATG	3 cut(s)	64, 365, 427
FaiI	YATR	7 cut(s)	62, 363, 425, 520, 590, 684, 746
FatI	CATG	3 cut(s)	60, 361, 423
FbaI	TGATCA	2 cut(s)	312, 454
FokI	GGATG	2 cut(s)	290, 515
FriOI	GRGCYC	1 cut(s)	641
FspBI	CTAG	2 cut(s)	203, 342
HaeIII	GGCC	3 cut(s)	117, 171, 658
HapII	CCGG	4 cut(s)	166, 299, 533, 659
Hin1II	CATG	3 cut(s)	64, 365, 427
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	4 cut(s)	166, 299, 533, 659
HphI	GGTGA	2 cut(s)	26, 761
Hpy166II	GTNNAC	2 cut(s)	564, 597
Hpy188I	TCNGA	4 cut(s)	163, 379, 448, 454
Hpy188III	TCNNGA	5 cut(s)	99, 105, 310, 350, 458
Hpy8I	GTNNAC	2 cut(s)	564, 597
HpyCH4III	ACNGT	2 cut(s)	628, 767
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	3 cut(s)	188, 365, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 194
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	64, 365, 427
Ksp22I	TGATCA	2 cut(s)	312, 454
Kzo9I	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	37, 131, 179, 312, 546, 672
LweI	GCATC	1 cut(s)	674
MaeI	CTAG	2 cut(s)	203, 342
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	32, 767
MalI	GATC	6 cut(s)	103, 314, 348, 445, 456, 545
MboI	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
MboII	GAAGA	8 cut(s)	56, 59, 141, 218, 232, 365, 685, 702
MhlI	GDGCHC	3 cut(s)	60, 298, 641
MluCI	AATT	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	467, 480, 647
MnlI	CCTC	3 cut(s)	87, 648, 715
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	166, 299, 533, 659
MspR9I	CCNGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	15, 194
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
NlaIII	CATG	3 cut(s)	64, 365, 427
NlaIV	GGNNCC	4 cut(s)	170, 240, 303, 621
NmuCI	GTSAC	2 cut(s)	32, 767
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	641
PspN4I	GGNNCC	4 cut(s)	170, 240, 303, 621
PspPI	GGNCC	3 cut(s)	163, 169, 238
PspXI	VCTCGAGB	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	3 cut(s)	598, 614, 730
RsaNI	GTAC	3 cut(s)	597, 613, 729
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	641
Sau3AI	GATC	6 cut(s)	101, 312, 346, 443, 454, 543
Sau96I	GGNCC	3 cut(s)	163, 169, 238
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	60, 298, 641
SetI	ASST	5 cut(s)	20, 199, 204, 602, 641
SfaNI	GCATC	1 cut(s)	674
Sfr274I	CTCGAG	1 cut(s)	640
SinI	GGWCC	2 cut(s)	163, 238
SlaI	CTCGAG	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	3 cut(s)	262, 577, 617
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	203, 342
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	628, 767
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	3 cut(s)	104, 411, 641
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	373
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	32, 767
Tsp45I	GTSAC	2 cut(s)	32, 767
TspDTI	ATGAA	2 cut(s)	440, 509
Tth111I	GACNNNGTC	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	163, 238
XceI	RCATGY	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	640
XspI	CTAG	2 cut(s)	203, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.