Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Reverse (-)

51995323 .. 51996294

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATGTTGTGGATGAAATGGCGGTGCGTCTTGTAGCCTCGTTGGGACTGGCTGATGGCCCCTGTGCTTATAACAAGCGCTCCTTCATGGGCATGTTTCGCCAGCATGGAGGCTCAATGGTCGATATACGACCCAGGCACACGGGGACCAGTTTCTGTCACCTTGACGGATCTTTCGGTCATAATTGCATCCTTCGCGGCAGTCCATGGGGATTTGATCGAGCACCGATGGTTTTGGAACCCTATGATGGCATAGGAGATCTCATGCCGGAGACTAAGGTTAAACAGGAGGTTGTAGTGCCCGTTGGGAATGAGTTGTTGTACGTGAAATCTGGACCGGTTCAAGCTGCTACAACGAACAAGGTTTTGGAGGCTGTGGCTAGTATGGTTTTGTATGAGACTGCAACTGCAAATACAGAGACAGCTTTGGTGCCGATGGTCAATCATCATCGTAAACGAGTTGATGATGGTGATGAGTCGCCTAAGAAATCGAGGTTGAGTTTGGCTGTAGGAACTAGGAAGAACAAATCTGGATGTTGTATCATTGGGGTTGACTGTTCTGAAGAAGGTGTCAGAGACACCAAGGAAGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.57

Weight (kDa)

6.3

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	23, 198
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	2 cut(s)	347, 425
AluI	AGCT	2 cut(s)	347, 425
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	4 cut(s)	266, 392, 413, 570
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	156
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AsiGI	ACCGGT	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	59, 147, 335
AsuHPI	GGTGA	2 cut(s)	152, 482
AvaII	GGWCC	2 cut(s)	147, 335
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	5 cut(s)	50, 223, 242, 430, 461
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	4 cut(s)	266, 392, 413, 570
BfaI	CTAG	2 cut(s)	381, 516
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	82
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	2 cut(s)	199, 348
BlsI	GCNGC	2 cut(s)	200, 349
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	147, 335
BmgT120I	GGNCC	3 cut(s)	59, 147, 335
BmiI	GGNNCC	4 cut(s)	61, 148, 240, 432
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	3 cut(s)	134, 206, 582
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	54, 150
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	3 cut(s)	134, 206, 582
BseGI	GGATG	4 cut(s)	10, 19, 189, 539
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	54, 150
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	430
BshTI	ACCGGT	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	269, 338
BslFI	GGGAC	2 cut(s)	60, 160
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	4 cut(s)	266, 392, 413, 570
BsmFI	GGGAC	2 cut(s)	60, 160
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	226, 303
Bsp143I	GATC	3 cut(s)	170, 217, 259
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	2 cut(s)	23, 198
BspANI	GGCC	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	61, 148, 240, 432
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	54, 150
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	134, 206, 582
BssMI	GATC	3 cut(s)	170, 217, 259
BssT1I	CCWWGG	2 cut(s)	206, 582
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	276, 483
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	10, 19, 189, 539
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	173, 220, 262
BstMAI	GTCTC	4 cut(s)	266, 392, 413, 570
BstMBI	GATC	3 cut(s)	170, 217, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 195
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	170, 259
BstYI	RGATCY	2 cut(s)	170, 259
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	4 cut(s)	10, 19, 189, 539
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	59, 147, 335
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	322
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	5 cut(s)	88, 94, 107, 207, 265
CviJI	RGCY	9 cut(s)	38, 53, 60, 114, 347, 374, 380, 425, 506
CviKI_1	RGCY	9 cut(s)	38, 53, 60, 114, 347, 374, 380, 425, 506
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	276, 483
DpnI	GATC	3 cut(s)	172, 219, 261
DpnII	GATC	3 cut(s)	170, 217, 259
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	2 cut(s)	206, 582
Eco47I	GGWCC	2 cut(s)	147, 335
Eco47III	AGCGCT	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	206, 582
ErhI	CCWWGG	2 cut(s)	206, 582
FaeI	CATG	5 cut(s)	91, 97, 110, 210, 268
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	2 cut(s)	60, 160
FatI	CATG	5 cut(s)	87, 93, 106, 206, 264
Fnu4HI	GCNGC	2 cut(s)	199, 348
FokI	GGATG	4 cut(s)	17, 26, 176, 546
Fsp4HI	GCNGC	2 cut(s)	199, 348
FspBI	CTAG	2 cut(s)	381, 516
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	199, 348
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	2 cut(s)	269, 338
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	91, 97, 110, 210, 268
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	269, 338
HphI	GGTGA	2 cut(s)	152, 482
Hpy166II	GTNNAC	2 cut(s)	455, 553
Hpy188I	TCNGA	2 cut(s)	562, 575
Hpy188III	TCNNGA	2 cut(s)	333, 531
Hpy8I	GTNNAC	2 cut(s)	455, 553
HpyAV	CCTTC	3 cut(s)	94, 203, 560
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	189, 404, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 195
HpyF3I	CTNAG	2 cut(s)	276, 483
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	91, 97, 110, 210, 268
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	170, 217, 259
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	381, 516
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	172, 219, 261
MboI	GATC	3 cut(s)	170, 217, 259
MboII	GAAGA	2 cut(s)	532, 575
MflI	RGATCY	2 cut(s)	170, 259
MhlI	GDGCHC	2 cut(s)	226, 303
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	6 cut(s)	49, 104, 283, 364, 486, 585
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	2 cut(s)	269, 338
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	99, 195
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	170, 217, 259
NlaIII	CATG	5 cut(s)	91, 97, 110, 210, 268
NlaIV	GGNNCC	4 cut(s)	61, 148, 240, 432
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	200, 349
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Ppu21I	YACGTR	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	61, 148, 240, 432
PspPI	GGNCC	3 cut(s)	59, 147, 335
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	170, 259
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	199, 348
Sau3AI	GATC	3 cut(s)	170, 217, 259
Sau96I	GGNCC	3 cut(s)	59, 147, 335
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	226, 303
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	147, 335
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	23, 198
SspMI	CTAG	2 cut(s)	381, 516
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	206, 582
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	123, 220, 491
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	30, 76
TspGWI	ACGGA	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	147, 335
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	2 cut(s)	381, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.