RLG00000010546

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003633
Physical Location & Seq
Forward (+)
2546422 .. 2547243
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010546

Sequence Viewer

Length: 822 bp
ATGTTGAGCCCTTTCAGCTGTGGCTTTTTCCACCCAGAAACATCTGATGAGTTCGACGAACCCATCATCACAAATAGTCCTTGTTCGACTCCAAGAAGATCATCGGGCAGACGAAGTGGTGGTTTCATTCATAGAATCCATAACCATAACAAGGACAGCAAGAACCCGTATTCGACTCGAGGGCTCGACAAGTTCTCTGCCCTCATGGCCGATCTTGAAGAGAAACGCCAGCAGATTTATGCTCAAACCGGCTCTCAGGACAATACCTTCGTTCGATTTGTGTACAAGGACTCAAACGACAGCTCTCCTGTTCCAATTGTGCTGAAGTTGAAGGACAAGGGGCAACAAGAGCAGAAAACGAAGCCTCCTCATCATCATCATGAAGAAAAGCAAGCAGAAGCGTTAGATAAATTGACCGTTAAGCCCTCAGTAGCGCCCGCCAAAGAAGTACTACCCGAGCAACAACCCAAGACCAATACTATTAAGAACAACATGATTGACTTCTTGCGGAACATCAACTTCAGGCGGCCGTCGTTTTATCTTCCGGTGGTTGTGGTGTTGATTTTGGTGTTGCTGGCCGTGTTTGGGCGGTCGGTGGCGATTTTGTGTACCTCTATCGGTTGGTACGCAATTCCAACACTGAAAGAACAGAGCTTGAATACTACAAGAAGATCAAGAAAAACTTCGAAGCCAAAAGAACACGTGAAAAGGTCGAGTGAGAATAAGATGGTGATTGGTACTAGTGAAGGATTGTCTTCTCCGAAAAGTGACAACAATACCACCCCCCGATCCCGGAAACATGGTCACCGGAAAAGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.02

Weight (kDa)

9.89

Isoelectric Point (pI)

74.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 438, 508, 526, 589
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 3 cut(s) 207, 527, 576
AcuI CTGAAG 2 cut(s) 344, 505
AcvI CACGTG 1 cut(s) 703
AfaI GTAC 5 cut(s) 284, 450, 610, 626, 739
AfiI CCNNNNNNNGG 3 cut(s) 151, 585, 792
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 3 cut(s) 218, 331, 658
AhlI ACTAGT 1 cut(s) 740
AluBI AGCT 3 cut(s) 18, 303, 654
AluI AGCT 3 cut(s) 18, 303, 654
AlwI GGATC 1 cut(s) 783
Ama87I CYCGRG 2 cut(s) 177, 455
AoxI GGCC 3 cut(s) 207, 527, 576
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 1 cut(s) 682
AspLEI GCGC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 793
AsuHPI GGTGA 2 cut(s) 742, 797
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 177, 455
BanII GRGCYC 2 cut(s) 11, 186
BbrPI CACGTG 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 747
BccI CCATC 2 cut(s) 71, 721
BceAI ACGGC 2 cut(s) 514, 563
BcnI CCSGG 1 cut(s) 793
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 1 cut(s) 793
BmeT110I CYCGRG 2 cut(s) 177, 455
BmrFI CCNGG 1 cut(s) 793
BpiI GAAGAC 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 793
BsaAI YACGTR 1 cut(s) 703
BsaWI WCCGGW 2 cut(s) 544, 807
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 585, 792
Bse118I RCCGGY 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 151, 585, 792
BseMII CTCAG 2 cut(s) 269, 441
BseRI GAGGAG 1 cut(s) 357
BseX3I CGGCCG 1 cut(s) 527
Bsh1285I CGRYCG 2 cut(s) 530, 593
BshFI GGCC 3 cut(s) 209, 529, 578
BsiEI CGRYCG 2 cut(s) 530, 593
BsiHKCI CYCGRG 2 cut(s) 177, 455
BsiSI CCGG 4 cut(s) 249, 545, 793, 808
BslI CCNNNNNNNGG 3 cut(s) 151, 585, 792
BsnI GGCC 3 cut(s) 209, 529, 578
BsoBI CYCGRG 2 cut(s) 177, 455
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 11, 186
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 4 cut(s) 98, 211, 671, 788
BspACI CCGC 4 cut(s) 438, 508, 526, 589
BspANI GGCC 3 cut(s) 209, 529, 578
BspCNI CTCAG 2 cut(s) 268, 440
BspHI TCATGA 1 cut(s) 379
BspPI GGATC 1 cut(s) 783
BspT104I TTCGAA 1 cut(s) 686
BsrFI RCCGGY 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 248
BssMI GATC 4 cut(s) 98, 211, 671, 788
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 703
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 4 cut(s) 230, 393, 438, 576
BstDEI CTNAG 2 cut(s) 255, 427
BstEII GGTNACC 1 cut(s) 803
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 4 cut(s) 101, 214, 674, 791
BstMBI GATC 4 cut(s) 98, 211, 671, 788
BstMCI CGRYCG 2 cut(s) 530, 593
BstMWI GCNNNNNNNGC 3 cut(s) 15, 206, 349
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 1 cut(s) 791
BstV2I GAAGAC 1 cut(s) 747
BstZI CGGCCG 1 cut(s) 527
BsuRI GGCC 3 cut(s) 209, 529, 578
BtsIMutI CAGTG 1 cut(s) 638
Cac8I GCNNGC 4 cut(s) 230, 393, 438, 576
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 5 cut(s) 283, 449, 609, 625, 738
CviAII CATG 4 cut(s) 205, 380, 493, 800
CviQI GTAC 5 cut(s) 283, 449, 609, 625, 738
DdeI CTNAG 2 cut(s) 255, 427
DpnI GATC 4 cut(s) 100, 213, 673, 790
DpnII GATC 4 cut(s) 98, 211, 671, 788
EaeI YGGCCR 3 cut(s) 207, 527, 576
EagI CGGCCG 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 527
Eco24I GRGCYC 2 cut(s) 11, 186
Eco52I CGGCCG 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 344, 505
Eco72I CACGTG 1 cut(s) 703
Eco88I CYCGRG 2 cut(s) 177, 455
Eco91I GGTNACC 1 cut(s) 803
EcoO65I GGTNACC 1 cut(s) 803
EcoT38I GRGCYC 2 cut(s) 11, 186
FaeI CATG 4 cut(s) 208, 383, 496, 803
FaiI YATR 8 cut(s) 132, 141, 147, 206, 240, 381, 494, 801
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FatI CATG 4 cut(s) 204, 379, 492, 799
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 527
FriOI GRGCYC 2 cut(s) 11, 186
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 1 cut(s) 741
GlaI GCGC 1 cut(s) 435
GluI GCNGC 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 3 cut(s) 209, 529, 578
HapII CCGG 4 cut(s) 249, 545, 793, 808
HhaI GCGC 1 cut(s) 436
Hin1II CATG 4 cut(s) 208, 383, 496, 803
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 4 cut(s) 88, 135, 175, 290
HpaII CCGG 4 cut(s) 249, 545, 793, 808
HphI GGTGA 2 cut(s) 742, 797
Hpy166II GTNNAC 2 cut(s) 283, 609
Hpy188I TCNGA 2 cut(s) 46, 762
Hpy188III TCNNGA 4 cut(s) 215, 257, 380, 675
Hpy8I GTNNAC 2 cut(s) 283, 609
Hpy99I CGWCG 2 cut(s) 59, 535
HpyAV CCTTC 3 cut(s) 277, 325, 740
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 206, 349
HpyF3I CTNAG 2 cut(s) 255, 427
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 4 cut(s) 208, 383, 496, 803
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 4 cut(s) 98, 211, 671, 788
LpnPI CCDG 9 cut(s) 48, 242, 242, 262, 321, 508, 558, 560, 806
MaeI CTAG 1 cut(s) 741
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 2 cut(s) 767, 803
MalI GATC 4 cut(s) 100, 213, 673, 790
MboI GATC 4 cut(s) 98, 211, 671, 788
MboII GAAGA 6 cut(s) 108, 230, 395, 533, 681, 747
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 11, 186
MluCI AATT 3 cut(s) 315, 410, 630
MlyI GAGTC 3 cut(s) 82, 169, 284
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 6 cut(s) 173, 212, 375, 378, 436, 622
MroXI GAANNNNTTC 1 cut(s) 682
MseI TTAA 2 cut(s) 420, 483
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 4 cut(s) 249, 545, 793, 808
MspR9I CCNGG 1 cut(s) 793
MunI CAATTG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 15, 206, 349
NciI CCSGG 1 cut(s) 793
NdeII GATC 4 cut(s) 98, 211, 671, 788
NlaIII CATG 4 cut(s) 208, 383, 496, 803
NmuCI GTSAC 2 cut(s) 767, 803
NspV TTCGAA 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 177
PagI TCATGA 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 791
PkrI GCNGC 1 cut(s) 528
PleI GAGTC 3 cut(s) 82, 169, 284
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
PpsI GAGTC 3 cut(s) 82, 169, 284
Ppu21I YACGTR 1 cut(s) 703
PspCI CACGTG 1 cut(s) 703
PspEI GGTNACC 1 cut(s) 803
PspXI VCTCGAGB 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 5 cut(s) 284, 450, 610, 626, 739
RsaNI GTAC 5 cut(s) 283, 449, 609, 625, 738
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 420, 483
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 4 cut(s) 98, 211, 671, 788
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 3 cut(s) 82, 169, 284
ScrFI CCNGG 1 cut(s) 793
SduI GDGCHC 2 cut(s) 11, 186
SetI ASST 7 cut(s) 20, 269, 305, 614, 656, 705, 713
Sfr274I CTCGAG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 3 cut(s) 315, 410, 630
SsiI CCGC 4 cut(s) 438, 508, 526, 589
SspMI CTAG 1 cut(s) 741
StyD4I CCNGG 1 cut(s) 791
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 705
TaqI TCGA 8 cut(s) 54, 86, 173, 178, 186, 274, 686, 713
TasI AATT 3 cut(s) 315, 410, 630
TatI WGTACW 2 cut(s) 282, 448
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 2 cut(s) 420, 483
Tru9I TTAA 2 cut(s) 420, 483
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 2 cut(s) 767, 803
Tsp45I GTSAC 2 cut(s) 767, 803
TspDTI ATGAA 3 cut(s) 115, 119, 396
TspRI CASTG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 1 cut(s) 741
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.