Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Reverse (-)

69808807 .. 69810405

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG496900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGAGCCCTTTCAGCTGTGGCTTTTTCCACCCAGAAACATCTGATGAGTTCGACGAACCCATCATCACAAATAGTCCTTGTTCGACTCCAAGAAGATCATCGGGCAGACGAAGTGGTGGTTTCATTCATAGAATCCATAACCACAACAAGGACAGCAAGAACCCGTATTCGACTCGAGGGCTCGACAAGTTCTCTGCCCTCATGGCCGATCTTGAAGAGAAACGCCAGCAGATTTATGCTCAAACCGGTTCTCAGGACGATACCTTCGTTCGATTTGTGTACAAGGACTCAAACGACAGCTCTCCTGTTCCAATTGTGCTGAAGTTGAAGGACAAGAAGCAACAAGAGCAGAAAACGAAGCCTCATCATCATCATGAAGAAAAGCATGCAGAAGCGTTAGATAAATTGACCGTTAAACCCTCCGTAGCGCCCGCCAAAGAAGAAGTACCACCCGAGCAACAACCTAAGACCAATACTATAAAGAACAACATGTTTGACTTCTTGCGGAGCATCAACTTCAGGCGACCGTCGTTTTATCTTCCGGTGGTTGTGGTGTTGATTTTGGTGTTGCTGGCCGTGTTTGGGCGGTCGGTGGCGATTTTGTGTACCTCTATCGGTTGGTATGCAATTCCAACACTGAAAGAACAGAGCTTGAATACTGCAAGAAGATCAAGAAAAGCTTCGAAGCCAAAAGAACATGCGAAAAGGTCGAGTGAGAATAAGATGGTGATTGGTACTAGTGAAGGATTGTCTTCTCCGAAAAGTGACAACAATACCACGCCCCGATCCCGGAAACATGGTCACCGGAAAAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.03

Weight (kDa)

9.82

Isoelectric Point (pI)

75.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	435, 508, 589
AclWI	GGATC	1 cut(s)	783
AcoI	YGGCCR	2 cut(s)	207, 576
AcuI	CTGAAG	2 cut(s)	344, 505
AfaI	GTAC	4 cut(s)	284, 450, 610, 739
AfiI	CCNNNNNNNGG	3 cut(s)	151, 585, 792
AflIII	ACRYGT	1 cut(s)	492
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	218, 331, 658
AhlI	ACTAGT	1 cut(s)	740
AluBI	AGCT	4 cut(s)	18, 303, 654, 683
AluI	AGCT	4 cut(s)	18, 303, 654, 683
AlwI	GGATC	1 cut(s)	783
Ama87I	CYCGRG	2 cut(s)	177, 455
AoxI	GGCC	2 cut(s)	207, 576
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AsiGI	ACCGGT	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	2 cut(s)	742, 797
AsuII	TTCGAA	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	177, 455
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanII	GRGCYC	2 cut(s)	11, 186
BbsI	GAAGAC	1 cut(s)	747
BccI	CCATC	2 cut(s)	71, 721
BceAI	ACGGC	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	793
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	793
BmeT110I	CYCGRG	2 cut(s)	177, 455
BmrFI	CCNGG	1 cut(s)	793
BmsI	GCATC	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	793
BsaWI	WCCGGW	3 cut(s)	248, 544, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 585, 792
Bse118I	RCCGGY	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	151, 585, 792
BseMII	CTCAG	1 cut(s)	269
Bsh1285I	CGRYCG	2 cut(s)	530, 593
BshFI	GGCC	2 cut(s)	209, 578
BshTI	ACCGGT	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	530, 593
BsiHKCI	CYCGRG	2 cut(s)	177, 455
BsiSI	CCGG	4 cut(s)	249, 545, 793, 808
BslI	CCNNNNNNNGG	3 cut(s)	151, 585, 792
BsnI	GGCC	2 cut(s)	209, 578
BsoBI	CYCGRG	2 cut(s)	177, 455
Bsp119I	TTCGAA	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	11, 186
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	98, 211, 671, 788
BspACI	CCGC	3 cut(s)	435, 508, 589
BspANI	GGCC	2 cut(s)	209, 578
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	376
BspPI	GGATC	1 cut(s)	783
BspT104I	TTCGAA	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	4 cut(s)	98, 211, 671, 788
Bst4CI	ACNGT	2 cut(s)	415, 531
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	4 cut(s)	230, 390, 435, 576
BstDEI	CTNAG	2 cut(s)	255, 468
BstEII	GGTNACC	1 cut(s)	803
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	4 cut(s)	101, 214, 674, 791
BstMBI	GATC	4 cut(s)	98, 211, 671, 788
BstMCI	CGRYCG	2 cut(s)	530, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
BstNSI	RCATGY	3 cut(s)	392, 496, 704
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	791
BstV2I	GAAGAC	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	209, 578
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	4 cut(s)	230, 390, 435, 576
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	283, 449, 609, 738
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	6 cut(s)	205, 377, 389, 493, 701, 800
CviQI	GTAC	4 cut(s)	283, 449, 609, 738
DdeI	CTNAG	2 cut(s)	255, 468
DpnI	GATC	4 cut(s)	100, 213, 673, 790
DpnII	GATC	4 cut(s)	98, 211, 671, 788
EaeI	YGGCCR	2 cut(s)	207, 576
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	11, 186
Eco57I	CTGAAG	2 cut(s)	344, 505
Eco88I	CYCGRG	2 cut(s)	177, 455
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
EcoT38I	GRGCYC	2 cut(s)	11, 186
FaeI	CATG	6 cut(s)	208, 380, 392, 496, 704, 803
FalI	AAGNNNNNCTT	2 cut(s)	667, 699
FatI	CATG	6 cut(s)	204, 376, 388, 492, 700, 799
FauI	CCCGC	1 cut(s)	442
FriOI	GRGCYC	2 cut(s)	11, 186
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	209, 578
HapII	CCGG	4 cut(s)	249, 545, 793, 808
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	6 cut(s)	208, 380, 392, 496, 704, 803
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	4 cut(s)	88, 135, 175, 290
HpaII	CCGG	4 cut(s)	249, 545, 793, 808
HphI	GGTGA	2 cut(s)	742, 797
Hpy166II	GTNNAC	2 cut(s)	283, 609
Hpy188I	TCNGA	2 cut(s)	46, 762
Hpy188III	TCNNGA	4 cut(s)	215, 257, 377, 675
Hpy8I	GTNNAC	2 cut(s)	283, 609
Hpy99I	CGWCG	2 cut(s)	59, 535
HpyAV	CCTTC	3 cut(s)	277, 325, 740
HpyCH4III	ACNGT	2 cut(s)	415, 531
HpyCH4V	TGCA	3 cut(s)	392, 629, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
HpyF3I	CTNAG	2 cut(s)	255, 468
Hsp92II	CATG	6 cut(s)	208, 380, 392, 496, 704, 803
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	4 cut(s)	98, 211, 671, 788
LmnI	GCTCC	1 cut(s)	510
LpnPI	CCDG	9 cut(s)	48, 242, 242, 262, 321, 508, 558, 560, 806
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	767, 803
MalI	GATC	4 cut(s)	100, 213, 673, 790
MboI	GATC	4 cut(s)	98, 211, 671, 788
MboII	GAAGA	7 cut(s)	108, 230, 392, 455, 533, 681, 747
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	11, 186
MluCI	AATT	3 cut(s)	315, 407, 630
MlyI	GAGTC	3 cut(s)	82, 169, 284
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	5 cut(s)	173, 212, 375, 433, 622
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	249, 545, 793, 808
MspR9I	CCNGG	1 cut(s)	793
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
NciI	CCSGG	1 cut(s)	793
NdeII	GATC	4 cut(s)	98, 211, 671, 788
NlaIII	CATG	6 cut(s)	208, 380, 392, 496, 704, 803
NmuCI	GTSAC	2 cut(s)	767, 803
NspI	RCATGY	3 cut(s)	392, 496, 704
NspV	TTCGAA	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	248
PleI	GAGTC	3 cut(s)	82, 169, 284
PpsI	GAGTC	3 cut(s)	82, 169, 284
PscI	ACATGT	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	803
PspXI	VCTCGAGB	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	4 cut(s)	284, 450, 610, 739
RsaNI	GTAC	4 cut(s)	283, 449, 609, 738
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	98, 211, 671, 788
SchI	GAGTC	3 cut(s)	82, 169, 284
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	2 cut(s)	11, 186
SetI	ASST	8 cut(s)	20, 269, 305, 469, 614, 656, 685, 713
SfaNI	GCATC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	686
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	740
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	3 cut(s)	315, 407, 630
SsiI	CCGC	3 cut(s)	435, 508, 589
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	415, 531
TaqI	TCGA	8 cut(s)	54, 86, 173, 178, 186, 274, 686, 713
TasI	AATT	3 cut(s)	315, 407, 630
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	767, 803
Tsp45I	GTSAC	2 cut(s)	767, 803
TspDTI	ATGAA	3 cut(s)	115, 119, 393
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	1 cut(s)	645
XceI	RCATGY	3 cut(s)	392, 496, 704
XhoI	CTCGAG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.