Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Reverse (-)

66471903 .. 66473489

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG501500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTGAGCCCTTTCAGCTGTGGCTTTTTCCACCCAGAAACATCTGATGAGTTCGACGAACCCATCATCACAAATAGTCCTTGTTCGACTCCAAGAAGATCATCGGGCAGACGAAGTGGTGGTTTCATTCATAGAATCCATAACCACAACAAGGACAGCAAGAACCCGTATTCGACTCGAGGGCTCGACAAGTTCTCTGCCCTCATGGCCGATCTTGAAGAGAAACGCCAGCAGATTTATGCTCAAACCGGCTCTCAGGACGATACCTTCGTTCGATTTGTGTACAAGGACTCAAACGACAGCTCTCCTGTTCCAATTGTGCTGAAGTTGAAGGACAAGAAGCAACAAGAGCAGAAAACGAAGCCTCATCATCATCATCATGAAGAAAAGCATGCAGAAGCGTTAGATAAATTGACCGTTAAACCCTCCGTAGCGCCCGCCAAAGAAGATGTACTACCCGAGCAACAAGCTAAGACCAATACTATGAAGGACAACATGTTTGACTTCTTGCAGAACATCAACTTCAGGCGACCGTCGTTTTATCTTCCGGTGGTTGTGGTGTTGATTTTGGTGTTGCTGGCCGTGTTTGGGCGGTCGGTGGCGATTTTGTGTACCTCTATCGGTTGGTATGCAATTCCAACACTGAAAGAAAAGAGCTTGAATACTACAAGAAGATCAAGAAAAGCTTCGAAGCCAAAACAACATGTGAAAAGGTCGAGTGAGAATAAGACGGTGATTGGTACTAGTGAAGGATTGTCTTCTCCGAAAAGTGACAACAATACCACGCCCCGATCCCGGCAACATGGTCACCGGAAAAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

31.19

Weight (kDa)

9.76

Isoelectric Point (pI)

72.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	438, 592
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	2 cut(s)	207, 579
AcuI	CTGAAG	2 cut(s)	344, 508
AfaI	GTAC	4 cut(s)	284, 453, 613, 742
AfiI	CCNNNNNNNGG	3 cut(s)	151, 588, 795
AflIII	ACRYGT	2 cut(s)	495, 703
AgsI	TTSAA	3 cut(s)	218, 331, 661
AhlI	ACTAGT	1 cut(s)	743
AluBI	AGCT	5 cut(s)	18, 303, 470, 657, 686
AluI	AGCT	5 cut(s)	18, 303, 470, 657, 686
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	2 cut(s)	177, 458
AoxI	GGCC	2 cut(s)	207, 579
ArsI	GACNNNNNNTTYG	4 cut(s)	251, 283, 482, 514
Asp700I	GAANNNNTTC	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	2 cut(s)	745, 800
AsuII	TTCGAA	1 cut(s)	689
AvaI	CYCGRG	2 cut(s)	177, 458
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanII	GRGCYC	2 cut(s)	11, 186
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BbsI	GAAGAC	1 cut(s)	750
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	796
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	796
BmeT110I	CYCGRG	2 cut(s)	177, 458
BmrFI	CCNGG	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	796
BsaWI	WCCGGW	2 cut(s)	547, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 588, 795
Bse118I	RCCGGY	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	151, 588, 795
BseMII	CTCAG	1 cut(s)	269
Bsh1285I	CGRYCG	2 cut(s)	533, 596
BshFI	GGCC	2 cut(s)	209, 581
BsiEI	CGRYCG	2 cut(s)	533, 596
BsiHKCI	CYCGRG	2 cut(s)	177, 458
BsiSI	CCGG	4 cut(s)	249, 548, 796, 811
BslI	CCNNNNNNNGG	3 cut(s)	151, 588, 795
BsnI	GGCC	2 cut(s)	209, 581
BsoBI	CYCGRG	2 cut(s)	177, 458
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	11, 186
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	98, 211, 674, 791
BspACI	CCGC	2 cut(s)	438, 592
BspANI	GGCC	2 cut(s)	209, 581
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	379
BspPI	GGATC	1 cut(s)	786
BspT104I	TTCGAA	1 cut(s)	689
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	4 cut(s)	98, 211, 674, 791
Bst4CI	ACNGT	3 cut(s)	418, 534, 733
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	4 cut(s)	230, 393, 438, 579
BstDEI	CTNAG	2 cut(s)	255, 471
BstEII	GGTNACC	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	4 cut(s)	101, 214, 677, 794
BstMBI	GATC	4 cut(s)	98, 211, 674, 791
BstMCI	CGRYCG	2 cut(s)	533, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
BstNSI	RCATGY	3 cut(s)	395, 499, 707
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	794
BstV2I	GAAGAC	1 cut(s)	750
BsuRI	GGCC	2 cut(s)	209, 581
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	4 cut(s)	230, 393, 438, 579
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	283, 452, 612, 741
CviAII	CATG	6 cut(s)	205, 380, 392, 496, 704, 803
CviQI	GTAC	4 cut(s)	283, 452, 612, 741
DdeI	CTNAG	2 cut(s)	255, 471
DpnI	GATC	4 cut(s)	100, 213, 676, 793
DpnII	GATC	4 cut(s)	98, 211, 674, 791
EaeI	YGGCCR	2 cut(s)	207, 579
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	11, 186
Eco57I	CTGAAG	2 cut(s)	344, 508
Eco88I	CYCGRG	2 cut(s)	177, 458
Eco91I	GGTNACC	1 cut(s)	806
EcoO65I	GGTNACC	1 cut(s)	806
EcoT38I	GRGCYC	2 cut(s)	11, 186
FaeI	CATG	6 cut(s)	208, 383, 395, 499, 707, 806
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FatI	CATG	6 cut(s)	204, 379, 391, 495, 703, 802
FauI	CCCGC	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	11, 186
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	209, 581
HapII	CCGG	4 cut(s)	249, 548, 796, 811
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	6 cut(s)	208, 383, 395, 499, 707, 806
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	4 cut(s)	88, 135, 175, 290
HpaII	CCGG	4 cut(s)	249, 548, 796, 811
HphI	GGTGA	2 cut(s)	745, 800
Hpy166II	GTNNAC	2 cut(s)	283, 612
Hpy188I	TCNGA	2 cut(s)	46, 765
Hpy188III	TCNNGA	4 cut(s)	215, 257, 380, 678
Hpy8I	GTNNAC	2 cut(s)	283, 612
Hpy99I	CGWCG	2 cut(s)	59, 538
HpyAV	CCTTC	4 cut(s)	277, 325, 481, 743
HpyCH4III	ACNGT	3 cut(s)	418, 534, 733
HpyCH4V	TGCA	3 cut(s)	395, 511, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
HpyF3I	CTNAG	2 cut(s)	255, 471
Hsp92II	CATG	6 cut(s)	208, 383, 395, 499, 707, 806
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	98, 211, 674, 791
LpnPI	CCDG	9 cut(s)	48, 242, 242, 262, 321, 511, 561, 563, 809
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	770, 806
MalI	GATC	4 cut(s)	100, 213, 676, 793
MboI	GATC	4 cut(s)	98, 211, 674, 791
MboII	GAAGA	7 cut(s)	108, 230, 395, 458, 536, 684, 750
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	11, 186
MluCI	AATT	3 cut(s)	315, 410, 633
MlyI	GAGTC	3 cut(s)	82, 169, 284
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	5 cut(s)	173, 212, 375, 436, 625
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	249, 548, 796, 811
MspR9I	CCNGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	15, 206, 349
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	4 cut(s)	98, 211, 674, 791
NlaIII	CATG	6 cut(s)	208, 383, 395, 499, 707, 806
NmuCI	GTSAC	2 cut(s)	770, 806
NspI	RCATGY	3 cut(s)	395, 499, 707
NspV	TTCGAA	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	379
PciI	ACATGT	2 cut(s)	495, 703
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	135
PleI	GAGTC	3 cut(s)	82, 169, 284
PpsI	GAGTC	3 cut(s)	82, 169, 284
PscI	ACATGT	2 cut(s)	495, 703
PspEI	GGTNACC	1 cut(s)	806
PspXI	VCTCGAGB	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	4 cut(s)	284, 453, 613, 742
RsaNI	GTAC	4 cut(s)	283, 452, 612, 741
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	4 cut(s)	98, 211, 674, 791
SchI	GAGTC	3 cut(s)	82, 169, 284
ScrFI	CCNGG	1 cut(s)	796
SduI	GDGCHC	2 cut(s)	11, 186
SetI	ASST	8 cut(s)	20, 269, 305, 472, 617, 659, 688, 716
Sfr274I	CTCGAG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	743
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	315, 410, 633
SsiI	CCGC	2 cut(s)	438, 592
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	794
TaaI	ACNGT	3 cut(s)	418, 534, 733
TaqI	TCGA	8 cut(s)	54, 86, 173, 178, 186, 274, 689, 716
TasI	AATT	3 cut(s)	315, 410, 633
TatI	WGTACW	2 cut(s)	282, 451
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	2 cut(s)	770, 806
Tsp45I	GTSAC	2 cut(s)	770, 806
TspDTI	ATGAA	4 cut(s)	115, 119, 396, 500
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	1 cut(s)	648
XceI	RCATGY	3 cut(s)	395, 499, 707
XhoI	CTCGAG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.