Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

57332977 .. 57334309

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTTAGCCCTTTCAGCTGTGGCAATTTTAGCCAAGTAGATGATGATGAACCCGTTACTGCTAGTCCATATTCGACCACGAAAAAATCAAGATCAAGAAGAAGCAGTAGTCTATTACATACAAGCAATAGCAGGGACAACAAGAACCCCTATGCAAATGTTGGCCTTGAGAAGTTCTCTGCAGTTATGGCCGAGCTAGAAGAGAAGAGGCAGCAGATCTATGCACAAACAGGCTCCCAAGATGAAACCTTAGTTCACTTCGTGTACAAGAAACCAGATGACAGTGTTCCTGTCCCGATTGTGGTTATTCTCAAGGACAAGAAGGATGACAAAACCAAGAGTGGTGGTAGTAGTCCTGATCGAGATGAAAAGCATGTTGTGAGTACCCCCCGGACTACAGAAGCCTTAGGTAATAAGTTTAAGACCATTGAAGAAATCAAGAAACCCGGGATGGTTTCCGATAAGTTAACTAAGAAAAGGGTGTACAAGAAGTGCTCGGACATGTGGATGATGCCGAGTTTTTATCTTCCAGTGGCTGTGATATTCATTCTGGTATTGTTGGCCGTGTTTGGGAGATCGATTGCGATTTTGTGTACCTCTATTGGGTGGTACGCAGTTCCGACGTTGAAAGAATACCAGAGCCCAAATACTAGTACAAGATCAAGAGCAACGAAGAAGAAGGACGAAGTTAGAAGATTGAGCGACAAAAAGATGGTAGCTGATCATGGATTGTTATCTTCTCCAAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.07

Weight (kDa)

9.55

Isoelectric Point (pI)

64.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	189, 561
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	6 cut(s)	266, 385, 485, 595, 611, 655
AfiI	CCNNNNNNNGG	3 cut(s)	301, 570, 603
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	431, 628
AhlI	ACTAGT	1 cut(s)	650
AluBI	AGCT	3 cut(s)	18, 196, 719
AluI	AGCT	3 cut(s)	18, 196, 719
Alw21I	GWGCWC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	3 cut(s)	163, 189, 561
ApeKI	GCWGC	1 cut(s)	211
AsuC2I	CCSGG	3 cut(s)	391, 447, 448
AvaI	CYCGRG	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	445, 706
BceAI	ACGGC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	3 cut(s)	391, 447, 448
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	3 cut(s)	63, 197, 651
BfmI	CTRYAG	2 cut(s)	180, 396
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	391, 447, 448
BmeT110I	CYCGRG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	391, 447, 448
BmsI	GCATC	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpuEI	CTTGAG	2 cut(s)	188, 296
BpuMI	CCSGG	3 cut(s)	391, 447, 448
Bsa29I	ATCGAT	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	733
BsaJI	CCNNGG	2 cut(s)	389, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 570, 603
Bse1I	ACTGG	1 cut(s)	530
Bse21I	CCTNAGG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	733
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	389, 446
BseGI	GGATG	3 cut(s)	331, 456, 513
BseJI	GATNNNNATC	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	301, 570, 603
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	3 cut(s)	165, 191, 563
BshVI	ATCGAT	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	391, 447
BslFI	GGGAC	2 cut(s)	149, 278
BslI	CCNNNNNNNGG	3 cut(s)	301, 570, 603
BsmFI	GGGAC	2 cut(s)	149, 278
BsnI	GGCC	3 cut(s)	165, 191, 563
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	497, 644
Bsp1407I	TGTACA	2 cut(s)	264, 483
Bsp143I	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
BspANI	GGCC	3 cut(s)	165, 191, 563
BspDI	ATCGAT	1 cut(s)	578
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	184
BsrGI	TGTACA	2 cut(s)	264, 483
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	389, 446
BssMI	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	195, 200
BstAUI	TGTACA	2 cut(s)	264, 483
BstDEI	CTNAG	3 cut(s)	250, 406, 471
BstF5I	GGATG	3 cut(s)	331, 456, 513
BstKTI	GATC	6 cut(s)	95, 219, 361, 578, 662, 724
BstMBI	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
BstNSI	RCATGY	2 cut(s)	377, 505
BstSCI	CCNGG	3 cut(s)	389, 445, 446
BstSFI	CTRYAG	2 cut(s)	180, 396
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	578
Bsu36I	CCTNAGG	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	165, 191, 563
BsuTUI	ATCGAT	1 cut(s)	578
BtsCI	GGATG	3 cut(s)	331, 456, 513
BtsIMutI	CAGTG	2 cut(s)	289, 537
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr9I	CCCGGG	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	578
Csp6I	GTAC	6 cut(s)	265, 384, 484, 594, 610, 654
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	3 cut(s)	374, 502, 725
CviQI	GTAC	6 cut(s)	265, 384, 484, 594, 610, 654
DdeI	CTNAG	3 cut(s)	250, 406, 471
DpnI	GATC	6 cut(s)	94, 218, 360, 577, 661, 723
DpnII	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	189, 561
Eam1104I	CTCTTC	2 cut(s)	195, 200
EarI	CTCTTC	2 cut(s)	195, 200
Eco24I	GRGCYC	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	644
FaeI	CATG	3 cut(s)	377, 505, 728
FaiI	YATR	9 cut(s)	70, 120, 153, 188, 222, 375, 503, 726, 751
FaqI	GGGAC	2 cut(s)	149, 278
FatI	CATG	3 cut(s)	373, 501, 724
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	3 cut(s)	338, 463, 520
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	3 cut(s)	63, 197, 651
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	165, 191, 563
HapII	CCGG	2 cut(s)	391, 447
Hin1II	CATG	3 cut(s)	377, 505, 728
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	391, 447
Hpy166II	GTNNAC	5 cut(s)	256, 265, 468, 484, 594
Hpy188I	TCNGA	3 cut(s)	460, 499, 621
Hpy188III	TCNNGA	7 cut(s)	90, 96, 295, 356, 362, 439, 663
Hpy8I	GTNNAC	5 cut(s)	256, 265, 468, 484, 594
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	2 cut(s)	316, 673
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	3 cut(s)	155, 182, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
HpyF3I	CTNAG	3 cut(s)	250, 406, 471
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	377, 505, 728
Ksp22I	TGATCA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	3 cut(s)	63, 197, 651
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	94, 218, 360, 577, 661, 723
MboI	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
MboII	GAAGA	9 cut(s)	111, 212, 217, 443, 518, 685, 688, 705, 729
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	497, 644
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	2 cut(s)	201, 607
MseI	TTAA	2 cut(s)	420, 467
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	2 cut(s)	391, 447
MspR9I	CCNGG	3 cut(s)	391, 447, 448
MwoI	GCNNNNNNNGC	3 cut(s)	15, 30, 188
NciI	CCSGG	3 cut(s)	391, 447, 448
NdeII	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
NlaIII	CATG	3 cut(s)	377, 505, 728
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	2 cut(s)	217, 540
NspI	RCATGY	2 cut(s)	377, 505
PciI	ACATGT	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	6 cut(s)	266, 385, 485, 595, 611, 655
RsaNI	GTAC	6 cut(s)	265, 384, 484, 594, 610, 654
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	420, 467
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	6 cut(s)	92, 216, 358, 575, 659, 721
ScrFI	CCNGG	3 cut(s)	391, 447, 448
SduI	GDGCHC	2 cut(s)	497, 644
SetI	ASST	7 cut(s)	20, 198, 251, 412, 599, 626, 721
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	2 cut(s)	180, 396
SmaI	CCCGGG	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	167, 311
SmoI	CTYRAG	2 cut(s)	167, 311
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	63, 197, 651
StyD4I	CCNGG	3 cut(s)	389, 445, 446
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	3 cut(s)	74, 361, 578
TasI	AATT	1 cut(s)	25
TatI	WGTACW	3 cut(s)	264, 483, 653
Tru1I	TTAA	2 cut(s)	420, 467
Tru9I	TTAA	2 cut(s)	420, 467
TscAI	CASTG	2 cut(s)	289, 537
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	63, 258, 381, 535
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	2 cut(s)	289, 537
XceI	RCATGY	2 cut(s)	377, 505
XmaI	CCCGGG	1 cut(s)	446
XspI	CTAG	3 cut(s)	63, 197, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.