Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003633

Physical Location & Seq

Genomic Coordinates Forward (+)

21826911 .. 21828807

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCATGTGATTGTTGTCGCGCCCCTCAATACTATATCTGGCTCTCTGTTCTTCCTTTCTCACAATCACAACCAAATCATTCAGCTCAGAGGGAAAAAAACCGTGAAAATTATCACAACATGTTGAGCCCCTTCAACTGTGCCACTTTTAATCACCAAGAAGAAGATGATGATGAGCCCATGATTTCAACTTCACCTCCAACTCCAAGAAAATCATCGAGATCGAAAAGCGCTGGCCTGATTTACAGAAGACACAACAAGGACAGCAAAAACCCTTATTCGGACAGCGGCCTCGACAAGTTTTCTGCACTTGTAGCTGACCTAGAAGAGAAAAGGAAGAAGATTTATGCACAAATGGACCCGAAAGACATATCTTTCGTGCGGTTCGTGTTCAAGGACGAGACTGATACAAGTGCTCCGGTTCCAATCGTGATAAAAAAGAAACACAAAAAGGTAGGCAAAACAAAGACAAGTGGTAATCCTGAAGAGAACCGTTCAAACCCTAATTCAGTAGCCTCGGAAAATATTGACCAATCCCACATCGACAAGAAAGACGTGAAGCAGAAGCAACCGGGATCGAAATCCGATCAAGAGAGCAAGAAGGGGAGTTTTTCAGGGAATTTAGTCTCCGAAATGTACCAACGCCGTGGCTGTACCGCTGTCTCGACGTCATGGTCACTTGAAAAGTTTGTGATGATCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.74

Weight (kDa)

8.94

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10220 AT1G10220 AT1G59590
fragaria_vesca	FvH4_2g33050 FvH4_7g23760
malus_domestica	MD01G1144800.v1.1 MD07G1211400.v1.1 MD08G1082000.v1.1 MD15G1068500.v1.1
prunus_persica	Prupe.1G422400_v2.0.a1 Prupe.2G244200_v2.0.a1
pyrus_communis	pycom01g16440 pycom07g19490 pycom15g06490
rosa_chinensis	RchiOBHm_Chr1g0369071 RchiOBHm_Chr6g0309661
rosa_laevigata	RLG00000010546 RLG00000027159
rosa_multiflora	Rmu_co8421877.1_g000001 Rmu_sc0004250.1_g000024 Rmu_sc0007632.1_g000008 Rmu_sc0008155.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288030
rosa_rugosa	Rorug01G0347800 Rorug06G0373700
rosa_samantha	Rh1AG354600 Rh1BG318000 Rh1CG332400 Rh1DG348800 Rh6AG487200 Rh6BG496900 Rh6CG501500 Rh6DG487700
rosa_wichuraiana	Rw1G031310 Rw6G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	673
AatII	GACGTC	1 cut(s)	671
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	288, 382, 657
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	2 cut(s)	638, 655
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	136, 189, 394, 498, 683
AjiI	CACGTC	1 cut(s)	556
AluBI	AGCT	2 cut(s)	86, 317
AluI	AGCT	2 cut(s)	86, 317
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	3 cut(s)	395, 631, 667
AlwI	GGATC	1 cut(s)	583
Aor51HI	AGCGCT	1 cut(s)	232
AoxI	GGCC	2 cut(s)	235, 289
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspLEI	GCGC	2 cut(s)	23, 233
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	146, 186
AvaII	GGWCC	1 cut(s)	358
BanII	GRGCYC	2 cut(s)	131, 180
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	395, 631, 667
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	360, 423
BmrFI	CCNGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	516, 646
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	516, 646
BseJI	GATNNNNATC	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	237, 291
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	419, 572
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	3 cut(s)	395, 631, 667
BsnI	GGCC	2 cut(s)	237, 291
Bsp1286I	GDGCHC	3 cut(s)	131, 180, 418
Bsp143I	GATC	4 cut(s)	221, 575, 586, 696
BspACI	CCGC	3 cut(s)	288, 382, 657
BspANI	GGCC	2 cut(s)	237, 291
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	360, 423
BspPI	GGATC	1 cut(s)	583
BssECI	CCNNGG	2 cut(s)	516, 646
BssMI	GATC	4 cut(s)	221, 575, 586, 696
BssNI	GRCGYC	1 cut(s)	668
Bst4CI	ACNGT	3 cut(s)	104, 140, 494
Bst6I	CTCTTC	2 cut(s)	321, 480
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	23, 233
BstKTI	GATC	4 cut(s)	224, 578, 589, 699
BstMAI	GTCTC	3 cut(s)	395, 631, 667
BstMBI	GATC	4 cut(s)	221, 575, 586, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	571
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	237, 291
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	646
BtrI	CACGTC	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	2 cut(s)	23, 233
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	637, 654
CviAII	CATG	4 cut(s)	6, 121, 181, 672
CviJI	RGCY	9 cut(s)	43, 86, 129, 178, 237, 291, 317, 515, 651
CviKI_1	RGCY	9 cut(s)	43, 86, 129, 178, 237, 291, 317, 515, 651
CviQI	GTAC	2 cut(s)	637, 654
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	4 cut(s)	223, 577, 588, 698
DpnII	GATC	4 cut(s)	221, 575, 586, 696
DrdI	GACNNNNNNGTC	1 cut(s)	673
DseDI	GACNNNNNNGTC	1 cut(s)	673
Eam1104I	CTCTTC	2 cut(s)	321, 480
EarI	CTCTTC	2 cut(s)	321, 480
Eco24I	GRGCYC	2 cut(s)	131, 180
Eco47I	GGWCC	1 cut(s)	358
Eco47III	AGCGCT	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	131, 180
FaeI	CATG	4 cut(s)	9, 124, 184, 675
FaiI	YATR	7 cut(s)	7, 36, 122, 182, 348, 371, 673
FatI	CATG	4 cut(s)	5, 120, 180, 671
Fnu4HI	GCNGC	1 cut(s)	289
FriOI	GRGCYC	2 cut(s)	131, 180
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	2 cut(s)	22, 232
GluI	GCNGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	237, 291
HapII	CCGG	2 cut(s)	419, 572
HhaI	GCGC	2 cut(s)	23, 233
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	9, 124, 184, 675
Hin6I	GCGC	2 cut(s)	21, 231
HinP1I	GCGC	2 cut(s)	21, 231
HpaII	CCGG	2 cut(s)	419, 572
HphI	GGTGA	2 cut(s)	146, 186
Hpy188I	TCNGA	5 cut(s)	90, 283, 520, 586, 631
Hpy188III	TCNNGA	5 cut(s)	219, 430, 482, 590, 664
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	2 cut(s)	142, 595
HpyCH4III	ACNGT	3 cut(s)	104, 140, 494
HpyCH4IV	ACGT	2 cut(s)	555, 668
HpyCH4V	TGCA	2 cut(s)	308, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	2 cut(s)	555, 668
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	9, 124, 184, 675
HspAI	GCGC	2 cut(s)	21, 231
Kzo9I	GATC	4 cut(s)	221, 575, 586, 696
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	7 cut(s)	25, 219, 251, 432, 495, 585, 600
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	555, 668
MaeIII	GTNAC	1 cut(s)	675
MalI	GATC	4 cut(s)	223, 577, 588, 698
MboI	GATC	4 cut(s)	221, 575, 586, 696
MboII	GAAGA	8 cut(s)	44, 173, 176, 261, 338, 349, 352, 497
MhlI	GDGCHC	3 cut(s)	131, 180, 418
MluCI	AATT	3 cut(s)	109, 505, 619
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	36, 84, 207, 302, 526
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	288, 659
MspI	CCGG	2 cut(s)	419, 572
MspR9I	CCNGG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	4 cut(s)	221, 575, 586, 696
NlaIII	CATG	4 cut(s)	9, 124, 184, 675
NlaIV	GGNNCC	2 cut(s)	360, 423
NmuCI	GTSAC	1 cut(s)	675
NspI	RCATGY	1 cut(s)	124
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	290
PscI	ACATGT	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	360, 423
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	638, 655
RsaNI	GTAC	2 cut(s)	637, 654
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	4 cut(s)	221, 575, 586, 696
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	3 cut(s)	131, 180, 418
SetI	ASST	7 cut(s)	88, 199, 319, 324, 456, 558, 671
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	109, 505, 619
SsiI	CCGC	3 cut(s)	288, 382, 657
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	3 cut(s)	104, 140, 494
TaiI	ACGT	2 cut(s)	558, 671
TaqI	TCGA	7 cut(s)	218, 224, 294, 543, 578, 665, 699
TasI	AATT	3 cut(s)	109, 505, 619
TauI	GCSGC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	675
Tsp45I	GTSAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.