Prupe.2G244200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0003633
Physical Location & Seq
Forward (+)
26217767 .. 26218895
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G244200.1

Sequence Viewer

Length: 768 bp
ATGTTCAGCCCTTTCAGCTGTGCCACTTTCCACCACCAAGAAGTTGATGAAGATGATGACCAACCCATGATTTCACCACCAAGAAAATCTTCAAGATCAAGAAGCACTGGCTTTCACAGAAGACATAGCAGGGACACCAAGAACCCGTATTCAAGCCGGGGCCTTGACAAGTTCTCTGCACTTGTAGCTGATCTTGAGGAGAAAAGACAGAAGATTTATGCTCAACCGGACTCAAAAGACATAAGCTTCGTCCGCTTTGTGTACAAGGACTCGACTGATACAAGTCTTCCTGTTCCAATCGTGGTTAAGCTCAGGGACAAAAAGGAAGACAAAGCCAAGACTTTAACTGATCACGAAGAAAAGCATGCAACCCCTAATATTGATCCTTCGTCCTTAGCCGTGAAAGAGGTCAAGCCGCCACCAAAATTGGAACCTGAAAAACAGAGTGAGCAGAGGACATTGTGGCGTTGGAACATGAAATCGGACAAGTGGAGAAGGCCGGCTTATTATCTGCCACTGGTTATAATCTTCATTTTGGTTTTGTTGGCTTTGTTTGGGCGGTCATTTGCAATATTATGCACGTCTGTTTGTTGGTACGCAATTCCAATGCTGAAAGAGAGCTCAAATAATGCAACAACGGGAGCAAAGAAGAAAGACTATGTTAGAAGATTGAGTGACAAAAACACGGCAGTTACTCAGGAACTCATGTCTTCTCCGAAAAGTAACCACAGATTCTTGGGCAAACATGTTCACCAGAAAAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.45

Weight (kDa)

9.65

Isoelectric Point (pI)

65.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
AciI CCGC 3 cut(s) 253, 416, 559
AclWI GGATC 1 cut(s) 377
AfaI GTAC 2 cut(s) 263, 596
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 2 cut(s) 93, 153
AjiI CACGTC 1 cut(s) 582
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 5 cut(s) 18, 188, 246, 310, 621
AluI AGCT 5 cut(s) 18, 188, 246, 310, 621
Alw21I GWGCWC 1 cut(s) 623
AlwI GGATC 1 cut(s) 377
AoxI GGCC 2 cut(s) 160, 497
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 66, 743
BanII GRGCYC 1 cut(s) 623
BbsI GAAGAC 4 cut(s) 127, 278, 333, 702
Bbv12I GWGCWC 1 cut(s) 623
BceAI ACGGC 2 cut(s) 383, 702
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 158
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 161, 432
BmrFI CCNGG 1 cut(s) 158
BpiI GAAGAC 4 cut(s) 127, 278, 333, 702
Bpu10I CCTNAGC 2 cut(s) 311, 394
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 112, 522
BseDI CCNNGG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 325, 710
BseNI ACTGG 2 cut(s) 112, 522
BseRI GAGGAG 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 162, 499
BsiHKAI GWGCWC 1 cut(s) 623
BsiSI CCGG 3 cut(s) 157, 227, 500
BslFI GGGAC 2 cut(s) 146, 329
BsmFI GGGAC 2 cut(s) 146, 329
BsnI GGCC 2 cut(s) 162, 499
Bsp1286I GDGCHC 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 4 cut(s) 95, 190, 349, 382
BspACI CCGC 3 cut(s) 253, 416, 559
BspANI GGCC 2 cut(s) 162, 499
BspCNI CTCAG 2 cut(s) 324, 709
BspLI GGNNCC 2 cut(s) 161, 432
BspPI GGATC 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 2 cut(s) 112, 522
BssAI RCCGGY 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 4 cut(s) 95, 190, 349, 382
BstAUI TGTACA 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 366, 501
BstDEI CTNAG 3 cut(s) 311, 394, 696
BstKTI GATC 4 cut(s) 98, 193, 352, 385
BstMBI GATC 4 cut(s) 95, 190, 349, 382
BstMWI GCNNNNNNNGC 3 cut(s) 15, 185, 252
BstNSI RCATGY 2 cut(s) 368, 749
BstSCI CCNGG 1 cut(s) 156
BstV2I GAAGAC 4 cut(s) 127, 278, 333, 702
BsuRI GGCC 2 cut(s) 162, 499
BtrI CACGTC 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 105, 515
Cac8I GCNNGC 2 cut(s) 366, 501
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 262, 595
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 5 cut(s) 67, 365, 475, 706, 746
CviQI GTAC 2 cut(s) 262, 595
DdeI CTNAG 3 cut(s) 311, 394, 696
DpnI GATC 4 cut(s) 97, 192, 351, 384
DpnII GATC 4 cut(s) 95, 190, 349, 382
Ecl136II GAGCTC 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 623
FaeI CATG 5 cut(s) 70, 368, 478, 709, 749
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 487, 519
FaqI GGGAC 2 cut(s) 146, 329
FatI CATG 5 cut(s) 66, 364, 474, 705, 745
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 623
Fsp4HI GCNGC 1 cut(s) 416
GluI GCNGC 1 cut(s) 416
HaeIII GGCC 2 cut(s) 162, 499
HapII CCGG 3 cut(s) 157, 227, 500
Hin1II CATG 5 cut(s) 70, 368, 478, 709, 749
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 3 cut(s) 230, 269, 732
HpaII CCGG 3 cut(s) 157, 227, 500
HphI GGTGA 2 cut(s) 66, 743
Hpy166II GTNNAC 2 cut(s) 262, 751
Hpy188I TCNGA 2 cut(s) 484, 717
Hpy188III TCNNGA 5 cut(s) 93, 99, 194, 353, 698
Hpy8I GTNNAC 2 cut(s) 262, 751
HpyAV CCTTC 2 cut(s) 396, 489
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 5 cut(s) 179, 368, 569, 579, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 185, 252
HpyF3I CTNAG 3 cut(s) 311, 394, 696
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 5 cut(s) 70, 368, 478, 709, 749
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 4 cut(s) 95, 190, 349, 382
LmnI GCTCC 1 cut(s) 641
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 3 cut(s) 674, 691, 722
MalI GATC 4 cut(s) 97, 192, 351, 384
MboI GATC 4 cut(s) 95, 190, 349, 382
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 2 cut(s) 425, 600
MlyI GAGTC 2 cut(s) 224, 263
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 3 cut(s) 190, 400, 447
MroNI GCCGGC 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 2 cut(s) 306, 344
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 3 cut(s) 157, 227, 500
MspR9I CCNGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 15, 185, 252
NaeI GCCGGC 1 cut(s) 501
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 95, 190, 349, 382
NgoMIV GCCGGC 1 cut(s) 499
NlaIII CATG 5 cut(s) 70, 368, 478, 709, 749
NlaIV GGNNCC 2 cut(s) 161, 432
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 2 cut(s) 368, 749
PaeI GCATGC 1 cut(s) 368
PciI ACATGT 1 cut(s) 745
PdiI GCCGGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 732
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 2 cut(s) 224, 263
PpsI GAGTC 2 cut(s) 224, 263
PscI ACATGT 1 cut(s) 745
PsiI TTATAA 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 623
PspN4I GGNNCC 2 cut(s) 161, 432
PspPI GGNCC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 2 cut(s) 263, 596
RsaNI GTAC 2 cut(s) 262, 595
SacI GAGCTC 1 cut(s) 623
SaqAI TTAA 2 cut(s) 306, 344
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 4 cut(s) 95, 190, 349, 382
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 2 cut(s) 224, 263
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 623
SetI ASST 8 cut(s) 20, 190, 248, 312, 411, 436, 584, 623
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SphI GCATGC 1 cut(s) 368
Sse9I AATT 2 cut(s) 425, 600
SsiI CCGC 3 cut(s) 253, 416, 559
SspI AATATT 2 cut(s) 379, 573
SstI GAGCTC 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 584
TaqI TCGA 1 cut(s) 272
TasI AATT 2 cut(s) 425, 600
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 732
Tru1I TTAA 2 cut(s) 306, 344
Tru9I TTAA 2 cut(s) 306, 344
TscAI CASTG 2 cut(s) 112, 522
TseFI GTSAC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 3 cut(s) 63, 491, 520
TspRI CASTG 2 cut(s) 112, 522
XceI RCATGY 2 cut(s) 368, 749
XmnI GAANNNNTTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.