Rorug01G0347800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003633
Physical Location & Seq
Reverse (-)
46577364 .. 46578533
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0347800.1

Sequence Viewer

Length: 1170 bp
ATGATGGGTGAAAGAGGAGGTCCTTACTGCTCTAAGAATTCTAAGAAGACTGACGATTACTGCGCTGATGAATCAGGTAGACTATTAAGCACGTCAAGAGCTGGCTGCATTCTCGGTGGGTTTGATATAAGAGCTCTCATAATTCTCATTATCCTCATTCCAACCTACATTTTTGGCATATATGCGCATGGACAGAAGGTTTCATACTTGTTGCGACCATTATGGGAATCAGCACCCAAACCTTTCCATGATATCCCACACTATTATCACGAGAATGCGTCCATGTCTCACCTCTGCAGACTTCACGGTTGGGGCATCCGCGAGTACCCTAGGCGTGTATATGATGCTGTGTTGTTCAATAATGAGATAGACATCCTTACAATACGATGGAAAGAACTGTATCCTTACGTAACTAAATTTGTTCTCCTGGAGTCAAATTCAACATTTTCTGGAATTATCAAGCCATTGTATTTTGCAAGAAACCGGGATCAGTTCGACTTTGTTGAACCCCGGTTGGTTTATGGGAGGGTTGGAAGAACATCCAAGAAAGGAGAAAACCCATTTGTGGAGGAGGCATATCAGCGAAGAGTATTGGACTTTCTCCTCCAAGAAAAAGCTGGTATTACCGACGATGACTTGTTGATAATGTCTGATGTTGATGAGATCCCAAGCAGACACACTATCAATCTCCTGAGGTGGTGTGATGATATTCCTCAAGTTCTTCATCTTCGGCTGAAGAACTATCTTTATTCGTTTGAGTTTCTTGTGGACAACAACAGTTGGAGGGCCTCAGTACACAGGTATCAAGAGAATGTGACCAAATATGCTCACTTTCGCCAGACAGATGATATCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAGAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGTCACAATGATCGTATCAGATTTAACAAGTATCTAAACCCTAAAAGAGTTCAGGATGTAATCTGCAAGGGAGACGATTTGTTTGACATGCTTCCAGAAGAGTACACATTCAAGGAAATCATTGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCAGCATGTCTATTGGAGAATGCAGACAAGTATAAATTCCTGTTGCCTGGGAATTGCGAAAGGCAAAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

45.62

Weight (kDa)

7.96

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 42 - 387 4.9e-180 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
AccI GTMKAC 1 cut(s) 79
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 495, 658
AcsI RAATTY 4 cut(s) 37, 416, 436, 1130
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 3 cut(s) 326, 795, 1031
AfiI CCNNNNNNNGG 1 cut(s) 565
AgsI TTSAA 4 cut(s) 358, 441, 506, 1039
AjiI CACGTC 1 cut(s) 93
AjnI CCWGG 3 cut(s) 426, 852, 1141
AluBI AGCT 5 cut(s) 101, 134, 617, 879, 1085
AluI AGCT 5 cut(s) 101, 134, 617, 879, 1085
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 291, 993
AlwI GGATC 2 cut(s) 495, 658
AoxI GGCC 2 cut(s) 786, 1060
ApaI GGGCCC 1 cut(s) 1064
ApeKI GCWGC 2 cut(s) 105, 876
ApoI RAATTY 4 cut(s) 37, 416, 436, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 65, 187
AspS9I GGNCC 4 cut(s) 20, 786, 1060, 1061
AsuC2I CCSGG 2 cut(s) 485, 511
AsuHPI GGTGA 2 cut(s) 20, 281
AvaII GGWCC 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 1064
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BanII GRGCYC 2 cut(s) 136, 1064
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 92, 888
BccI CCATC 1 cut(s) 381
BciT130I CCWGG 3 cut(s) 428, 854, 1143
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 2 cut(s) 485, 511
BcoDI GTCTC 2 cut(s) 291, 993
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 295
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 2 cut(s) 106, 877
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 2 cut(s) 107, 878
Bme1390I CCNGG 5 cut(s) 428, 485, 511, 854, 1143
Bme18I GGWCC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 4 cut(s) 20, 786, 1060, 1061
BmiI GGNNCC 1 cut(s) 1062
BmrFI CCNGG 5 cut(s) 428, 485, 511, 854, 1143
BmsI GCATC 3 cut(s) 324, 334, 850
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 2 cut(s) 485, 511
BsaAI YACGTR 1 cut(s) 409
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 329, 509, 1142
Bsc4I CCNNNNNNNGG 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 1165
Bse21I CCTNAGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 3 cut(s) 428, 854, 1143
BseDI CCNNGG 3 cut(s) 329, 509, 1142
BseGI GGATG 4 cut(s) 315, 372, 539, 988
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 3 cut(s) 683, 804, 1095
BseNI ACTGG 1 cut(s) 1165
BseRI GAGGAG 3 cut(s) 30, 584, 593
BseSI GKGCMC 1 cut(s) 1064
BseXI GCAGC 2 cut(s) 92, 888
BseYI CCCAGC 1 cut(s) 1096
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 788, 1062
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 2 cut(s) 484, 511
BslI CCNNNNNNNGG 1 cut(s) 565
BsmAI GTCTC 2 cut(s) 291, 993
BsmBI CGTCTC 1 cut(s) 993
BsmI GAATGC 3 cut(s) 108, 280, 1120
BsnI GGCC 2 cut(s) 788, 1062
Bsp120I GGGCCC 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 136, 1064
Bsp143I GATC 3 cut(s) 487, 663, 937
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 788, 1062
BspCNI CTCAG 3 cut(s) 684, 803, 1094
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 1062
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 2 cut(s) 495, 658
BsrDI GCAATG 1 cut(s) 871
BsrI ACTGG 1 cut(s) 1165
BssECI CCNNGG 3 cut(s) 329, 509, 1142
BssMI GATC 3 cut(s) 487, 663, 937
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 3 cut(s) 428, 854, 1143
Bst4CI ACNGT 4 cut(s) 308, 399, 779, 929
Bst6I CTCTTC 2 cut(s) 580, 1020
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 5 cut(s) 33, 42, 692, 790, 1081
BstF5I GGATG 4 cut(s) 315, 372, 539, 988
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 2 cut(s) 65, 187
BstKTI GATC 3 cut(s) 490, 666, 940
BstMAI GTCTC 2 cut(s) 291, 993
BstMBI GATC 3 cut(s) 487, 663, 937
BstMWI GCNNNNNNNGC 1 cut(s) 1059
BstNI CCWGG 3 cut(s) 428, 854, 1143
BstNSI RCATGY 2 cut(s) 1018, 1104
BstSCI CCNGG 5 cut(s) 426, 483, 509, 852, 1141
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 1064
BstSNI TACGTA 1 cut(s) 409
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 92, 888
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
Bsu36I CCTNAGG 1 cut(s) 692
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 2 cut(s) 788, 1062
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 4 cut(s) 315, 372, 539, 988
BtsIMutI CAGTG 1 cut(s) 904
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 2 cut(s) 65, 187
Cfr13I GGNCC 4 cut(s) 20, 786, 1060, 1061
CseI GACGC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 325, 794, 1030
CviAII CATG 5 cut(s) 188, 248, 283, 1015, 1101
CviQI GTAC 3 cut(s) 325, 794, 1030
DdeI CTNAG 5 cut(s) 33, 42, 692, 790, 1081
DpnI GATC 3 cut(s) 489, 665, 939
DpnII GATC 3 cut(s) 487, 663, 937
Eam1104I CTCTTC 2 cut(s) 580, 1020
EarI CTCTTC 2 cut(s) 580, 1020
Ecl136II GAGCTC 1 cut(s) 134
Eco105I TACGTA 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 136, 1064
Eco32I GATATC 2 cut(s) 253, 850
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 755
Eco81I CCTNAGG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 3 cut(s) 20, 786, 1061
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 426, 852, 1141
EcoRV GATATC 2 cut(s) 253, 850
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 2 cut(s) 136, 1064
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 5 cut(s) 191, 251, 286, 1018, 1104
FatI CATG 5 cut(s) 187, 247, 282, 1014, 1100
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 106, 877
FokI GGATG 4 cut(s) 302, 359, 526, 995
FriOI GRGCYC 2 cut(s) 136, 1064
Fsp4HI GCNGC 2 cut(s) 106, 877
FspAI RTGCGCAY 1 cut(s) 186
FspBI CTAG 1 cut(s) 330
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 64, 186
GluI GCNGC 2 cut(s) 106, 877
GsaI CCCAGC 1 cut(s) 1100
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 788, 1062
HapII CCGG 2 cut(s) 484, 511
HgaI GACGC 1 cut(s) 267
HhaI GCGC 2 cut(s) 65, 187
Hin1II CATG 5 cut(s) 191, 251, 286, 1018, 1104
Hin6I GCGC 2 cut(s) 63, 185
HinP1I GCGC 2 cut(s) 63, 185
HinfI GANTC 4 cut(s) 71, 227, 431, 894
HpaII CCGG 2 cut(s) 484, 511
HphI GGTGA 2 cut(s) 20, 281
Hpy166II GTNNAC 4 cut(s) 80, 769, 796, 1032
Hpy188I TCNGA 2 cut(s) 652, 947
Hpy188III TCNNGA 7 cut(s) 96, 269, 450, 691, 806, 980, 1022
Hpy8I GTNNAC 4 cut(s) 80, 769, 796, 1032
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 2 cut(s) 190, 913
HpyCH4III ACNGT 4 cut(s) 308, 399, 779, 929
HpyCH4IV ACGT 2 cut(s) 92, 408
HpyCH4V TGCA 7 cut(s) 108, 297, 476, 863, 876, 993, 1118
HpyF10VI GCNNNNNNNGC 1 cut(s) 1059
HpyF3I CTNAG 5 cut(s) 33, 42, 692, 790, 1081
HpySE526I ACGT 2 cut(s) 92, 408
Hsp92II CATG 5 cut(s) 191, 251, 286, 1018, 1104
HspAI GCGC 2 cut(s) 63, 185
Kzo9I GATC 3 cut(s) 487, 663, 937
Lsp1109I GCAGC 2 cut(s) 92, 888
LweI GCATC 3 cut(s) 324, 334, 850
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 92, 408
MaeIII GTNAC 3 cut(s) 409, 814, 929
MalI GATC 3 cut(s) 489, 665, 939
MboI GATC 3 cut(s) 487, 663, 937
MboII GAAGA 7 cut(s) 58, 546, 597, 713, 719, 748, 1037
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 136, 1064
MluCI AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 3 cut(s) 185, 511, 761
MseI TTAA 3 cut(s) 86, 912, 951
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 1085
MspI CCGG 2 cut(s) 484, 511
MspR9I CCNGG 5 cut(s) 428, 485, 511, 854, 1143
Mva1269I GAATGC 3 cut(s) 108, 280, 1120
MvaI CCWGG 3 cut(s) 428, 854, 1143
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 1059
NciI CCSGG 2 cut(s) 485, 511
NdeII GATC 3 cut(s) 487, 663, 937
NlaIII CATG 5 cut(s) 191, 251, 286, 1018, 1104
NlaIV GGNNCC 1 cut(s) 1062
NmuCI GTSAC 2 cut(s) 814, 929
NsbI TGCGCA 1 cut(s) 186
NspI RCATGY 2 cut(s) 1018, 1104
PctI GAATGC 3 cut(s) 108, 280, 1120
PfeI GAWTC 3 cut(s) 71, 227, 894
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 2 cut(s) 107, 878
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 426, 852, 1141
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 3 cut(s) 426, 852, 1141
PspN4I GGNNCC 1 cut(s) 1062
PspOMI GGGCCC 1 cut(s) 1060
PspPI GGNCC 4 cut(s) 20, 786, 1060, 1061
PspPPI RGGWCCY 1 cut(s) 20
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 3 cut(s) 326, 795, 1031
RsaNI GTAC 3 cut(s) 325, 794, 1030
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 86, 912, 951
SatI GCNGC 2 cut(s) 106, 877
Sau3AI GATC 3 cut(s) 487, 663, 937
Sau96I GGNCC 4 cut(s) 20, 786, 1060, 1061
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 5 cut(s) 428, 485, 511, 854, 1143
SduI GDGCHC 2 cut(s) 136, 1064
SfaNI GCATC 3 cut(s) 324, 334, 850
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SnaBI TACGTA 1 cut(s) 409
Sse9I AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 5 cut(s) 426, 483, 509, 852, 1141
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 4 cut(s) 308, 399, 779, 929
TaiI ACGT 2 cut(s) 95, 411
TaqI TCGA 1 cut(s) 495
TasI AATT 7 cut(s) 37, 141, 416, 436, 453, 1130, 1147
TatI WGTACW 2 cut(s) 793, 1029
TfiI GAWTC 3 cut(s) 71, 227, 894
Tru1I TTAA 3 cut(s) 86, 912, 951
Tru9I TTAA 3 cut(s) 86, 912, 951
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 2 cut(s) 814, 929
TseI GCWGC 2 cut(s) 105, 876
Tsp45I GTSAC 2 cut(s) 814, 929
TspDTI ATGAA 6 cut(s) 84, 192, 713, 895, 932, 1079
TspRI CASTG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 4 cut(s) 37, 416, 436, 1130
XceI RCATGY 2 cut(s) 1018, 1104
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.