Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Forward (+)

20003294 .. 20004091

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26511.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTATTGTTGTTACTGTAATAGAAGTTACTCTGCACATACGGGATGGGAACGAGGATGATGATATCATTGAGAGGGTCACGACGGAGTCTATGGAAGCATTTGCCCCCAAGCTTATTCCGGCAACTAAATCGTCTATTCAAGGTTTGGAGAAAGTAGGGGTTGATAGTTTGGAAATAAAATCTACTGGGGAACTGACACCATCGTGTGTTATTTGTATGGAAAAACTAGATTACTCTGATGATGATGATGAACCAGATCAAGAAGAGGGGGTAGTTGATAACACTGCTGATTGTAAAGCAGGTGAATTTTGTAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

4.05

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	317
BccI	CCATC	2 cut(s)	41, 211
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	52, 64
BseNI	ACTGG	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	52, 64
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	52, 64
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	293
CviJI	RGCY	2 cut(s)	5, 115
CviKI_1	RGCY	2 cut(s)	5, 115
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	67
FaiI	YATR	3 cut(s)	41, 95, 221
FokI	GGATG	2 cut(s)	59, 71
FspBI	CTAG	1 cut(s)	230
HapII	CCGG	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	82, 263
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	4 cut(s)	135, 174, 270, 288
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	13, 28, 79
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	278
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	49, 69, 262
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	98
SetI	ASST	3 cut(s)	117, 148, 307
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	19
TasI	AATT	1 cut(s)	308
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.