Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011596

Physical Location & Seq

Genomic Coordinates Reverse (-)

54498655 .. 54499732

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGATATCTTACTTTATTCGATGTTTCGCAGCAACACAGACCCTACCCGATCTGCGCCGTTCCGATCACATTCCACTTCTTCAAGTATAACGGATACCAACGTGAGATTGATCCTCCGCGAGACCTTAGTACTGTTTATATTAGCCGAATGACTTATGTAAGTACTGAAGTACTTAGAGTCCATCCCTCATCCAATAGGACTGCGGATCTACGGGATCAGATTGCTACGCTCCTCTCCGACTCTATACTTGTCACAGAAGAGGACCAGTCGACTATAATTGAAAAGGTATTTCAGGTGCTTGCCCCGGACCCCGAGCTTTGTATTTTTGTTGATGTGGCGGAAGTGACTCTGCAGATAGCGGATGACATTGACGCGGTTATTACAACGGAGTCCTTAAGAACATATATTCCCAAGCTTATTCCGGCAACTAAATCATCTATTGAAGGTTTGGAGAAAGTAGGGCTTGATAGCTTGGAAATCAAATCTAGTATTGAACTGACACCATCTTGTGTTATTTGTATGGAGGACCTTGATTACTCTGCAGAAGAAGGAGAGGGGGATGAAGCCAATCAATTATACTCCATGAGTGATTTGCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

201

Amino Acids

22.68

Weight (kDa)

4.32

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26511 FvH4_7g26671
prunus_persica	Prupe.3G294900_v2.0.a1 Prupe.3G297500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0375041
rosa_laevigata	RLG00000022445 RLG00000022832 RLG00000026696
rosa_multiflora	Rmu_sc0000554.1_g000009 Rmu_sc0004112.1_g000017
rosa_roxburghii	Rroxscaffold_1G00045440
rosa_rugosa	Rorug01G0387700 Rorug04G0079200 Rorug06G0066400 Rorug06G0066500
rosa_samantha	Rh1AG398300 Rh1DG319000 Rh2DG446000
rosa_wichuraiana	Rw1G035350 Rw1G035360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	2 cut(s)	121, 377
AciI	CCGC	5 cut(s)	119, 206, 341, 362, 377
AclWI	GGATC	3 cut(s)	107, 216, 225
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	133, 166, 174
AflII	CTTAAG	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	85, 284, 446, 497
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	319, 418, 474
AluI	AGCT	3 cut(s)	319, 418, 474
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	107, 216, 225
Ama87I	CYCGRG	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	265, 310, 529
AsuC2I	CCSGG	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	265, 310, 529
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	192, 514
BceAI	ACGGC	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	353, 543
BfrI	CTTAAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmcAI	AGTACT	3 cut(s)	133, 166, 174
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	265, 310, 529
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	3 cut(s)	265, 310, 529
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	4 cut(s)	184, 191, 370, 568
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	121, 377
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	308, 425
BsmAI	GTCTC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	51, 66, 112, 208, 217
BspACI	CCGC	5 cut(s)	119, 206, 341, 362, 377
BspFNI	CGCG	2 cut(s)	121, 377
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	2 cut(s)	357, 547
BspPI	GGATC	3 cut(s)	107, 216, 225
BspTI	CTTAAG	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	51, 66, 112, 208, 217
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	128, 176
BstF5I	GGATG	4 cut(s)	184, 191, 370, 568
BstFNI	CGCG	2 cut(s)	121, 377
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	5 cut(s)	54, 69, 115, 211, 220
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	51, 66, 112, 208, 217
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	353, 543
BstUI	CGCG	2 cut(s)	121, 377
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	184, 191, 370, 568
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	265, 310, 529
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	132, 165, 173
CviAII	CATG	1 cut(s)	586
CviJI	RGCY	6 cut(s)	147, 319, 418, 466, 474, 569
CviKI_1	RGCY	6 cut(s)	147, 319, 418, 466, 474, 569
CviQI	GTAC	3 cut(s)	132, 165, 173
DdeI	CTNAG	2 cut(s)	128, 176
DpnI	GATC	5 cut(s)	53, 68, 114, 210, 219
DpnII	GATC	5 cut(s)	51, 66, 112, 208, 217
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	265, 310, 529
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	8
FaeI	CATG	1 cut(s)	589
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	4 cut(s)	171, 178, 377, 575
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	32
HapII	CCGG	2 cut(s)	308, 425
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	180, 242, 349, 392
HpaII	CCGG	2 cut(s)	308, 425
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	66, 222, 241
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	440, 545
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	355, 545
HpyF3I	CTNAG	2 cut(s)	128, 176
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	51, 66, 112, 208, 217
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	281, 281, 321, 438, 584
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	253, 346
MalI	GATC	5 cut(s)	53, 68, 114, 210, 219
MboI	GATC	5 cut(s)	51, 66, 112, 208, 217
MboII	GAAGA	3 cut(s)	73, 272, 560
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	279, 575
MlyI	GAGTC	4 cut(s)	189, 236, 343, 401
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	126, 199, 245, 256, 520, 550
MseI	TTAA	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	2 cut(s)	308, 425
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	121, 377
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	5 cut(s)	51, 66, 112, 208, 217
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	253, 346
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	4 cut(s)	188, 236, 343, 400
PpsI	GAGTC	4 cut(s)	188, 236, 343, 400
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	3 cut(s)	265, 310, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	357, 547
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	133, 166, 174
RsaNI	GTAC	3 cut(s)	132, 165, 173
SalI	GTCGAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	5 cut(s)	51, 66, 112, 208, 217
Sau96I	GGNCC	3 cut(s)	265, 310, 529
ScaI	AGTACT	3 cut(s)	133, 166, 174
SchI	GAGTC	4 cut(s)	189, 236, 343, 401
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	9 cut(s)	106, 129, 291, 300, 321, 420, 451, 476, 534
SfcI	CTRYAG	2 cut(s)	353, 543
SinI	GGWCC	3 cut(s)	265, 310, 529
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	2 cut(s)	279, 575
SsiI	CCGC	5 cut(s)	119, 206, 341, 362, 377
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	21, 272
TasI	AATT	2 cut(s)	279, 575
TatI	WGTACW	3 cut(s)	131, 164, 172
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseFI	GTSAC	2 cut(s)	253, 346
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	253, 346
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	2 cut(s)	108, 404
Vha464I	CTTAAG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	265, 310, 529
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	3 cut(s)	133, 166, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.